Locus 7341

Sequence ID 2L_DroMel_CAF1
Location 20,481,880 – 20,482,000
Length 120
Max. P 0.991793
window11777

overview

Window 7

Location 20,481,880 – 20,482,000
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.67
Mean single sequence MFE -22.56
Consensus MFE -19.26
Energy contribution -19.10
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -2.15
Structure conservation index 0.85
SVM decision value 2.29
SVM RNA-class probability 0.991793
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20481880 120 - 22407834
UACAACCCUACUCGACCCAAACUCGAAGCAACCAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAACAUAAAAAUGAAGCACUACAAAAAACGCAGGAAUAUACAAGGAAAA
......(((...............(((((((...........)))))))..((((((((.......(((.((..(((....)))..)).))).......))))))))......))).... ( -21.14)
>DroSec_CAF1 34795 115 - 1
UACAACCCUA-----CCCAAACUCGAAGCAACCAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAACAUAAAAAUGAAGCACUACAAAAAACGCAGGGAAAAACAAGGAAAA
.....((((.-----((((.....(((((((...........))))))).......((....))..))))((..(((....)))..))..............)))).............. ( -21.00)
>DroSim_CAF1 38616 115 - 1
CACAACCCUA-----CCCAAACUCGAAGCAACCAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAACAUAAAAAUGAAGCACUACAAAAAACGCUGGGAAAAACAAGGAAAA
..........-----((((.....(((((((...........))))))).......(((.......(((.((..(((....)))..)).))).......))))))).............. ( -20.14)
>DroEre_CAF1 37208 113 - 1
--CAACUCUU-----CCCAAGCUCGAAGCAACUAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAGCAUAAAAAUAGAGCUGUACAAAAAACGCAGAGAAAGGCAAGGAAAA
--......((-----((...(((.(((((((...........)))))))..((((((((.((....))(..((((...........))))..)......))))))))..)))..)))).. ( -27.10)
>DroYak_CAF1 34470 113 - 1
--CAACCCUU-----CCCAAAGUCGAAGCAAUCAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAACAUAAAAAUGAAGCACUACAAAAAACGCAGAGAAAAACAAGGAAAA
--......((-----((.......(((((((...........)))))))..((((((((.......(((.((..(((....)))..)).))).......)))))))).......)))).. ( -23.44)
>consensus
_ACAACCCUA_____CCCAAACUCGAAGCAACCAUAAAAACUUUGCUUCUCUUUUUGCGACAGUCCUGGGGCAACAUAAAAAUGAAGCACUACAAAAAACGCAGGGAAAAACAAGGAAAA
......(((...............(((((((...........)))))))..((((((((...(((....)))..(((....)))...............))))))))......))).... (-19.26 = -19.10 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:09 2006