Locus 7339

Sequence ID 2L_DroMel_CAF1
Location 20,480,858 – 20,480,978
Length 120
Max. P 0.770079
window11774

overview

Window 4

Location 20,480,858 – 20,480,978
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -30.84
Consensus MFE -29.36
Energy contribution -29.60
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 0.53
SVM RNA-class probability 0.770079
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20480858 120 + 22407834
CUUUGCUGGUUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUAAUUAAAUUUGUUGCCCUGUUUUGUUGCAACUUGAAACCAAUUACGCAGGAUGUGAGUGGGCGUGCCCACACUGACAGUC
....((((...(((.(.(((((((.((((((((((.(((...........(((((.(......)..)))))............))).)))))))))).)))).)))).)))....)))). ( -32.30)
>DroSec_CAF1 33768 120 + 1
CUUUGCUGGUUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUAAUUAAAUUUGUUGCCCUGUUUUGUUGCAACUUGAAACCAAUUACGCAGGAUGUGAGUGGGCGUGCCCAUACUGACAGUC
....((((....((((.(((((((.((((((((((.(((...........(((((.(......)..)))))............))).)))))))))).)))).))).)).))...)))). ( -31.90)
>DroSim_CAF1 37591 120 + 1
CUUUGCUGGUUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUUAUUAAAUUUGUUGCCCUGUUUUGUUGCAACCNGAAACCAAUUACGCAAGAUGUGAGUGGGCGUGCCCAUACUGACAGUC
....((((....((((.(((((((.((((((((((.(((...........(((((.(......)..)))))............))).)))))))))).)))).))).)).))...)))). ( -31.60)
>DroEre_CAF1 35829 118 + 1
--UUGCUGGCUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUAAUUAAAUUUGUUGCCCUGUUUGGCUGCAACUUGAAACCAAUUACGCAGGAUGUGAGUGGGCGUUCCCAUACUGACAGUC
--..((((((.......)).((((.((((((((((.(((...........(((((((.....))..)))))............))).)))))))))).)))).............)))). ( -30.90)
>DroYak_CAF1 33345 118 + 1
--UUGCUGGUUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUAAUUAAAUUUGUUGCCCUGUUUUGUUGCAACUUGAAACCAAUUACGCAGGAUGUGAGUGGGCGUUCCCAUACUGACAGUC
--..((((....((.(((..((((.((((((((((.(((...........(((((.(......)..)))))............))).)))))))))).)))).....)))))...)))). ( -27.50)
>consensus
CUUUGCUGGUUUGUUGUGCAGCCCUUUCAUAUUUUAUGUUAAUUAAAUUUGUUGCCCUGUUUUGUUGCAACUUGAAACCAAUUACGCAGGAUGUGAGUGGGCGUGCCCAUACUGACAGUC
....((((....((((.(((((((.((((((((((.(((...........(((((.(......)..)))))............))).)))))))))).)))).))).)).))...)))). (-29.36 = -29.60 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:06 2006