Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,480,422 – 20,480,542 |
Length | 120 |
Max. P | 0.720511 |
Location | 20,480,422 – 20,480,542 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -25.72 |
Energy contribution | -25.56 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -1.32 |
Structure conservation index | 0.87 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20480422 120 - 22407834 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGUGGGCUAAAGUUUUCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUGUGGAUUAUUGGA ((....((((.(.((((((((((...................(((((((((((.......))))).))))))((...(((......)))..)).)))).)))))).).)))).....)). ( -28.20) >DroSec_CAF1 33335 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCUAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAGUUGCUUGUUUCGGAUUAUUGGU ((....((((((.((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).)))))).)))))).....)). ( -30.90) >DroSim_CAF1 37158 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCCAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUUCGGAUUAUUGGA ((....((((((.((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).)))))).)))))).....)). ( -33.70) >DroEre_CAF1 35398 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUGAACUGAGGGGUAAAGUUUGCUUGGCUCUACAGGCAUGCAUGAAUAAAUGAGGCAGAAAUUGCUUGUUGCGGAUUAUUGGA ((....((((.(.((((((((((...................(((.(((((.(((....))).))))).)))((...(((......)))..)).)))).)))))).).)))).....)). ( -31.90) >DroYak_CAF1 32914 120 - 1 CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUGAACUGAGAGGUAAAGUUUCUUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGGUUGUUAUGGAUUAUUGGA (((......)))((((.....((.((..((..(((((((...(((((((.(((((...))))).)))).)))((...(((......)))..))..)))))))..)).)).))...)))). ( -23.00) >consensus CCUAUUUUCGGGUCAAGCAUUUCGAUUUAUUUCCAAUUUAAACUGAGAGCUAAAGUUUCCUUGGCUUUACAGGCAUGCAUGAAUAAAUGAAGCAGAAAUUGCUUGUUGCGGAUUAUUGGA ((....((((...((((((((((...................(((((((((((.......)))))))).)))((...(((......)))..)).)))).))))))...)))).....)). (-25.72 = -25.56 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006