| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,479,431 – 20,479,584 |
| Length | 153 |
| Max. P | 0.854970 |
| Location | 20,479,431 – 20,479,549 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.18 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20479431 118 + 22407834 CAAAUAUUUUAUUUAAUAAUGCUUAUCACUCUUGCCGGAAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAUGUGGCUUUUUUCGAUUCCUCUAAAUCAGACAUA ..................(((((..........((((..(((...(((((((((((((.........)))))))))))))..))).)))).......((((......)))))).))). ( -20.20) >DroSec_CAF1 32363 118 + 1 CAAAUAUUUUAUUUAAUAUUGCUUAUCACUCCUGCCAGAAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAGUCAGACAUA ..((((((......)))))).............((((...((((((((((((((((((.........)))))))))))).)))))))))).......((((......))))....... ( -21.20) >DroSim_CAF1 36187 118 + 1 CAAAUAUUUUAUUUAAUAUUGCUUAUCACUCCUGCCAGAAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAAUCAGACAUA ..((((((......)))))).............((((...((((((((((((((((((.........)))))))))))).)))))))))).......((((......))))....... ( -21.20) >DroEre_CAF1 34435 102 + 1 CAAUUCAUUCAUUUAAUAAUGC-------------CAGCAUUUCACGAUUAAUUUGAUGACGUUAGCAUCGAGUUAGUCAAUGAAGUGGCUUUUUUCA-AU--UCUAAAUCAGACAUA ....................((-------------((...(((((.(((((((((((((.(....))))))))))))))..)))))))))........-..--............... ( -21.80) >consensus CAAAUAUUUUAUUUAAUAAUGCUUAUCACUCCUGCCAGAAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAAUCAGACAUA .................................((((...((((((((((((((((((.........)))))))))))).))))))))))............................ (-15.60 = -15.85 + 0.25)
| Location | 20,479,469 – 20,479,584 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.84 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -21.55 |
| Energy contribution | -21.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20479469 115 + 22407834 AAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAUGUGGCUUUUUUCGAUUCCUCUAAAUCAGACAUAAUUUGAUA-----UAUUUGCAUGCUGCGCUCGUUCUGGAA .......(((((((((((((.........)))))))))))))((((((..((.......((....))...((((((.....)))))).-----.........))..)).))))....... ( -22.10) >DroSec_CAF1 32401 118 + 1 AAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAGUCAGACAUAAUUUGAUAUUAUUUAUUUGCAUGCUG--CUCGUGCUGGAA .(((((((((((((((((((.........)))))))))))).)))))))................((((.((((((.....))))))...........(((((...--..))))))))). ( -26.10) >DroSim_CAF1 36225 113 + 1 AAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAAUCAGACAUAAUUUGAUA-----UAUUUGCAUGCUG--CUCGUGCUGGAA .(((((((((((((((((((.........)))))))))))).)))))))................((((.((((((.....)))))).-----.....(((((...--..))))))))). ( -25.80) >DroEre_CAF1 34460 110 + 1 CAUUUCACGAUUAAUUUGAUGACGUUAGCAUCGAGUUAGUCAAUGAAGUGGCUUUUUUCA-AU--UCUAAAUCAGACAUAAUUUGAUA-----UGUUUGCAUGCGG--CUCGUGCUGGCA (((((((.(((((((((((((.(....))))))))))))))..)))))))((........-..--.......((((((((......))-----))))))....(((--(....)))))). ( -33.40) >consensus AAUUUUAUGAUUAAUUUGAUGAUGUUGAAAUCGAAUUAAUCAAUGAAGUGGCUUUUUUCGAUUCCUCCAAAUCAGACAUAAUUUGAUA_____UAUUUGCAUGCUG__CUCGUGCUGGAA .(((((((((((((((((((.........)))))))))))).)))))))................((((.((((((.....))))))...........(((((.......))))))))). (-21.55 = -21.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:02 2006