Locus 7334

Sequence ID 2L_DroMel_CAF1
Location 20,478,616 – 20,478,736
Length 120
Max. P 0.990709
window11766

overview

Window 6

Location 20,478,616 – 20,478,736
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -20.92
Consensus MFE -18.48
Energy contribution -18.32
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.88
SVM decision value 2.23
SVM RNA-class probability 0.990709
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20478616 120 - 22407834
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGGCGCAGUGGAUAAUUUCGAAUUGAUUUAUGCAAAUUACGAAACCACAAAACCGAAUGCAAA
(((((((((((((((.............(((((((.(((........)))))))....)))....((((....))))..))))))))))))))).......................... ( -21.20)
>DroSec_CAF1 31561 120 - 1
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGGCGCAGUGGAUAAUUUCGAAUUGAUUUAUGUAAAUUACAAGACCACAAAACCGAAUGCAAA
(((((((((((((((.............(((((((.(((........)))))))....)))....((((....))))..))))))))))))))).......................... ( -19.20)
>DroSim_CAF1 35382 120 - 1
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGGCGCAGUGGAUAAUUUCGAAUUGAUUUAUGCAAAUUACAAGACCACAAAACCGAAUGCAAA
(((((((((((((((.............(((((((.(((........)))))))....)))....((((....))))..))))))))))))))).......................... ( -21.20)
>DroEre_CAF1 33647 120 - 1
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGUCGCAGUGGAUAAUUUCGAAUUGAUUUAUGCAAAUUACAGGACCACAAAACCAAAUGCAAA
(((((((((((((((.....((((..(((.......)))..))))...((((((....))))))...............))))))))))))))).......................... ( -21.50)
>DroYak_CAF1 31118 120 - 1
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGUCGCAGUGGAUAAUUUCGAAUUGAUUUAUGCAAAUUACAAAACCACAAAACCAAAUGCAAA
(((((((((((((((.....((((..(((.......)))..))))...((((((....))))))...............))))))))))))))).......................... ( -21.50)
>consensus
AUUUGCAUAAAUUAAACAAACUAAAAAUGCCAUCAACAUAAUUAGAAAUGUGAUACCGGGCGCAGUGGAUAAUUUCGAAUUGAUUUAUGCAAAUUACAAGACCACAAAACCGAAUGCAAA
(((((((((((((((.....((((..(((.......)))..))))...((((........))))...............))))))))))))))).......................... (-18.48 = -18.32 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:59 2006