Locus 7330

Sequence ID 2L_DroMel_CAF1
Location 20,475,012 – 20,475,131
Length 119
Max. P 0.999974
window11755

overview

Window 5

Location 20,475,012 – 20,475,131
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.38
Mean single sequence MFE -37.82
Consensus MFE -34.60
Energy contribution -34.60
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.86
Structure conservation index 0.91
SVM decision value 5.11
SVM RNA-class probability 0.999974
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20475012 119 + 22407834
CAAAACAAAGACCAUCCCAUAUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUAUUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG
...........((............(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))((....)))) ( -37.30)
>DroSec_CAF1 27987 119 + 1
CAAAACAAGGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG
........((......)).((((..(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))))))...... ( -38.40)
>DroSim_CAF1 31782 119 + 1
CAAAACAAAGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG
...........((............(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))((....)))) ( -37.30)
>DroEre_CAF1 30307 111 + 1
CGAAACAAGGA--------CCUCCAGCCUGUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG
(((.....((.--------...)).(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))......))). ( -40.00)
>DroYak_CAF1 27364 120 + 1
CAAAACAAAGAACAUCCCACCAUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGUAUAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGUCAUCGG
...................((....(((...((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))....)).)))((....)))) ( -36.10)
>consensus
CAAAACAAAGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU_UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG
.........................(((...((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))....)).))).......... (-34.60 = -34.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:49 2006