Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,475,012 – 20,475,131 |
Length | 119 |
Max. P | 0.999974 |
Location | 20,475,012 – 20,475,131 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.38 |
Mean single sequence MFE | -37.82 |
Consensus MFE | -34.60 |
Energy contribution | -34.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.86 |
Structure conservation index | 0.91 |
SVM decision value | 5.11 |
SVM RNA-class probability | 0.999974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20475012 119 + 22407834 CAAAACAAAGACCAUCCCAUAUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUAUUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG ...........((............(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))((....)))) ( -37.30) >DroSec_CAF1 27987 119 + 1 CAAAACAAGGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG ........((......)).((((..(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))))))...... ( -38.40) >DroSim_CAF1 31782 119 + 1 CAAAACAAAGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG ...........((............(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))((....)))) ( -37.30) >DroEre_CAF1 30307 111 + 1 CGAAACAAGGA--------CCUCCAGCCUGUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU-UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG (((.....((.--------...)).(((...((..((((((((((((.((((((((.(((((-(.......))).))).)))))))).))))))))))))....)).)))......))). ( -40.00) >DroYak_CAF1 27364 120 + 1 CAAAACAAAGAACAUCCCACCAUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGUAUAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGUCAUCGG ...................((....(((...((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))....)).)))((....)))) ( -36.10) >consensus CAAAACAAAGACCAUCCCAUCUUCAGCCUUUGAGAGUUCCAUGCUUCCUUGCAUUCAAUAGU_UAUACUCAAGCAUAUGGAAUGUAAAGAAGUAUGGAGCGAAAUCUGGCGAGACAUCGG .........................(((...((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))....)).))).......... (-34.60 = -34.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:49 2006