Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,122,068 – 2,122,217 |
Length | 149 |
Max. P | 0.994522 |
Location | 2,122,068 – 2,122,177 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -20.38 |
Energy contribution | -22.54 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.03 |
Mean z-score | -3.08 |
Structure conservation index | 0.68 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2122068 109 + 22407834 --------GUCCACCUUCGCCAUGUAAAAGUGAACAAUUGCCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGACUCAUUCCCC--UCUUUUUCUCGCAGU --------..........((...(.(((((.(....((((((((.((((((.....)))))).))).))))).....((((((((.-.......)))))))))--.))))).)..))... ( -27.00) >DroSec_CAF1 122358 117 + 1 CACUGCCAGUCCACCUUCGCCAGGUAAAAGUGAACAAUUGCCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGAUUCAUUCCCC--UCUUUUUCUCGCAGU .(((((.((...((((.....))))(((((.(....((((((((.((((((.....)))))).))).))))).....(((((((((-(....)))))))))))--.))))).)).))))) ( -35.40) >DroSim_CAF1 122146 111 + 1 CACUGCCAGU------UCGCCUGGUAAAAGUGAACAAUUGCCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGACUCAUUCCCC--UCUUUUUCUCGCAGU .(((((..((------((((.(.....).)))))).((((((((.((((((.....)))))).))).))))).....((((((((.-.......)))))))).--..........))))) ( -34.10) >DroEre_CAF1 125087 101 + 1 CAGUGCCAGUCCACCC----------------AACAAUUGCCAACUAUUUCUUAUCGAAAUACUUGUGCGCUAAUAAGCGAGUGGA-UGCCACUUCAUUCCCC--CCUUUUUCUCGCAGU .((((...((((((.(----------------.......(((((.((((((.....)))))).))).))(((....)))).)))))-)..)))).........--............... ( -23.60) >DroYak_CAF1 127399 120 + 1 CACUGCCAGUCCACCCUUACCAUGUAAAAGUGAACAAUUCCCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGGAAUCCGACUUCAUUCCCCUCCUUUUUUCUCGCAGU ........((.(((..((((...))))..))).))......(((.((((((.....)))))).)))((((..((.(((((((.(((((........))))).))))))).))..)))).. ( -30.20) >consensus CACUGCCAGUCCACCCUCGCCAGGUAAAAGUGAACAAUUGCCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA_UUCCGAUUCAUUCCCC__UCUUUUUCUCGCAGU .(((((.((...........................((((((((.((((((.....)))))).))).))))).....(((((((((.......)))))))))..........)).))))) (-20.38 = -22.54 + 2.16)
Location | 2,122,068 – 2,122,177 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -35.64 |
Consensus MFE | -20.06 |
Energy contribution | -23.92 |
Covariance contribution | 3.86 |
Combinations/Pair | 1.09 |
Mean z-score | -2.98 |
Structure conservation index | 0.56 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2122068 109 - 22407834 ACUGCGAGAAAAAGA--GGGGAAUGAGUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGGCAAUUGUUCACUUUUACAUGGCGAAGGUGGAC-------- ..((((..((....(--(((((.(((((....)-)))).)))))).))..))))(((.((((((.....)))))).)))......((((((((((.......))))))))))-------- ( -31.90) >DroSec_CAF1 122358 117 - 1 ACUGCGAGAAAAAGA--GGGGAAUGAAUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGGCAAUUGUUCACUUUUACCUGGCGAAGGUGGACUGGCAGUG (((((.........(--(((((.(((((....)-)))).))))))......((.(((.((((((.....)))))).)))))....((((((((((.......))))))))))..))))). ( -39.00) >DroSim_CAF1 122146 111 - 1 ACUGCGAGAAAAAGA--GGGGAAUGAGUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGGCAAUUGUUCACUUUUACCAGGCGA------ACUGGCAGUG (((((....((((((--(((((.(((((....)-)))).))))))......((.(((.((((((.....)))))).))))).........)))))..(((....------.)))))))). ( -34.50) >DroEre_CAF1 125087 101 - 1 ACUGCGAGAAAAAGG--GGGGAAUGAAGUGGCA-UCCACUCGCUUAUUAGCGCACAAGUAUUUCGAUAAGAAAUAGUUGGCAAUUGUU----------------GGGUGGACUGGCACUG .((.(........).--)).......((((.((-((((((((((....)))((.(((.((((((.....)))))).))))).......----------------))))))).)).)))). ( -34.80) >DroYak_CAF1 127399 120 - 1 ACUGCGAGAAAAAAGGAGGGGAAUGAAGUCGGAUUCCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGGGAAUUGUUCACUUUUACAUGGUAAGGGUGGACUGGCAGUG (((((.........((((.(((((........))))).))))............(((.((((((.....)))))).)))......((((((((((((...))))))))))))..))))). ( -38.00) >consensus ACUGCGAGAAAAAGA__GGGGAAUGAAUCGGAA_UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGGCAAUUGUUCACUUUUACAUGGCGAAGGUGGACUGGCAGUG (((((............(((((.((((.......)))).))))).......((.(((.((((((.....)))))).)))))....((((((((((.......))))))))))..))))). (-20.06 = -23.92 + 3.86)
Location | 2,122,100 – 2,122,217 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -19.84 |
Energy contribution | -20.20 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.80 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2122100 117 + 22407834 CCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGACUCAUUCCCC--UCUUUUUCUCGCAGUUCACUUGGCCAACUUUGUGCUUACCUUAAACGCUUGCUUU .(((.((((((.....)))))).))).(((....((((((((((((-((.(((..........--........))).)))))))))(((((....)).)))..)))))..)))....... ( -26.37) >DroSec_CAF1 122398 117 + 1 CCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGAUUCAUUCCCC--UCUUUUUCUCGCAGUUCACCUGGCAAACUUUGUGCUUACCUUUAACGCUUGCUUU .(((.((((((.....)))))).)))((((..((...(((((((((-(....)))))))))).--.....))..))))........(((((.....(((.(((....))))))))))).. ( -25.80) >DroSim_CAF1 122180 117 + 1 CCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA-UUCCGACUCAUUCCCC--UCUUUUUCUCGCAGUUCACCUGGCCAACUUUGUGCUUACCUUUAACGCUUGCUUU .(((.((((((.....)))))).))).(((((.....((((((((.-.......)))))))).--...........(((.....))))))......(((.(((....))))))..))... ( -23.50) >DroEre_CAF1 125111 117 + 1 CCAACUAUUUCUUAUCGAAAUACUUGUGCGCUAAUAAGCGAGUGGA-UGCCACUUCAUUCCCC--CCUUUUUCUCGCAGUUCACCUGGCCAACUUUGUGCUUACCUUUAACGCUUGCCUU .(((.((((((.....)))))).))).(((.(((((((((((((((-......)))))))...--...........(((.....)))...........)))))...))).)))....... ( -19.70) >DroYak_CAF1 127439 120 + 1 CCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGGAAUCCGACUUCAUUCCCCUCCUUUUUUCUCGCAGUUCACCUGGCCAACUUUGUGCUUACCUUUAACGCUUGCCUU .(((.((((((.....)))))).)))((((..((.(((((((.(((((........))))).))))))).))..))))........(((.......(((.(((....))))))..))).. ( -28.80) >consensus CCAACUAUUUCUCAUUGAAAUACUUGUGCGGUAAUAAGGGAGUGAA_UUCCGAUUCAUUCCCC__UCUUUUUCUCGCAGUUCACCUGGCCAACUUUGUGCUUACCUUUAACGCUUGCUUU .(((.((((((.....)))))).))).(((.......(((((((((.......)))))))))...................(((..((....))..)))...........)))....... (-19.84 = -20.20 + 0.36)
Location | 2,122,100 – 2,122,217 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -32.26 |
Consensus MFE | -23.82 |
Energy contribution | -24.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -2.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2122100 117 - 22407834 AAAGCAAGCGUUUAAGGUAAGCACAAAGUUGGCCAAGUGAACUGCGAGAAAAAGA--GGGGAAUGAGUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGG ...((..(((((((.(((.(((.....))).)))...))))).)).........(--(((((.(((((....)-)))).))))))......)).(((.((((((.....)))))).))). ( -32.20) >DroSec_CAF1 122398 117 - 1 AAAGCAAGCGUUAAAGGUAAGCACAAAGUUUGCCAGGUGAACUGCGAGAAAAAGA--GGGGAAUGAAUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGG .......((......(((((((.....))))))).(((((.((.........))(--(((((.(((((....)-)))).)))))).))))))).(((.((((((.....)))))).))). ( -35.10) >DroSim_CAF1 122180 117 - 1 AAAGCAAGCGUUAAAGGUAAGCACAAAGUUGGCCAGGUGAACUGCGAGAAAAAGA--GGGGAAUGAGUCGGAA-UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGG .......((......(((.(((.....))).))).(((((.((.........))(--(((((.(((((....)-)))).)))))).))))))).(((.((((((.....)))))).))). ( -31.50) >DroEre_CAF1 125111 117 - 1 AAGGCAAGCGUUAAAGGUAAGCACAAAGUUGGCCAGGUGAACUGCGAGAAAAAGG--GGGGAAUGAAGUGGCA-UCCACUCGCUUAUUAGCGCACAAGUAUUUCGAUAAGAAAUAGUUGG .......(((((((.(((.(((.....))).)))((((((.((.(........).--))........((((..-.)))))))))).))))))).(((.((((((.....)))))).))). ( -32.50) >DroYak_CAF1 127439 120 - 1 AAGGCAAGCGUUAAAGGUAAGCACAAAGUUGGCCAGGUGAACUGCGAGAAAAAAGGAGGGGAAUGAAGUCGGAUUCCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGG .......((......(((.(((.....))).))).(((((.(.....)......((((.(((((........))))).))))....))))))).(((.((((((.....)))))).))). ( -30.00) >consensus AAAGCAAGCGUUAAAGGUAAGCACAAAGUUGGCCAGGUGAACUGCGAGAAAAAGA__GGGGAAUGAAUCGGAA_UUCACUCCCUUAUUACCGCACAAGUAUUUCAAUGAGAAAUAGUUGG ...((..((......(((.(((.....))).))).((....))))............(((((.((((.......)))).))))).......)).(((.((((((.....)))))).))). (-23.82 = -24.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:15 2006