Locus 7328

Sequence ID 2L_DroMel_CAF1
Location 20,474,538 – 20,474,644
Length 106
Max. P 0.500000
window11752

overview

Window 2

Location 20,474,538 – 20,474,644
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.01
Mean single sequence MFE -27.04
Consensus MFE -20.36
Energy contribution -20.40
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.48
Structure conservation index 0.75
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20474538 106 - 22407834
---------GUGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAACCCCUUUCC-----CCACUCGUUUUCGGAUACAGCUC
---------..((........((((((..(((......))).....(((((((((....)))))))))..)).))))((((((....)))))-----)..................)).. ( -24.70)
>DroSec_CAF1 27525 106 - 1
---------GUGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAACGCCUUUCC-----CCUCUCGUUUUCGGAUACAGCUC
---------..((((((((.(((((((..(((......))).....(((((((((....)))))))))..)).)))))))))))))......-----..((.((....))))........ ( -26.70)
>DroSim_CAF1 29494 115 - 1
NNNNNNNNNNNGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAACGCCUUUCC-----CCCCUCGUUUUCGGAUACAGCUC
...........((((((((.(((((((..(((......))).....(((((((((....)))))))))..)).)))))))))))))......-----..((........))......... ( -26.80)
>DroEre_CAF1 29831 111 - 1
---------GUGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAGCCCCUUUCCGCUUUCCCCGCGUUUUCGAAUACAACUC
---------((((((((....(((.....(((......))))))...)))))))).((..(((((((..(((((...(((((((........))))))).)))))....)))))))..)) ( -29.20)
>DroYak_CAF1 26905 104 - 1
---------GUGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAAACCCUU-------UCCCCGCGUAUUCGGAUUCAACUC
---------((((((......((((((..(((......))).....(((((((((....)))))))))..)).))))((((((....))-------)))).))))))............. ( -27.80)
>consensus
_________GUGCGUUUUUAUAGUCCAACUGCAAUAAAGCAAUUUUUAAGCGCACUGAAGUGUGUUUAUAUGUGACUGGGAAACCCCUUUCC_____CCCCUCGUUUUCGGAUACAGCUC
.............((((((.(((((((..(((......))).....(((((((((....)))))))))..)).))))))))))).................................... (-20.36 = -20.40 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:46 2006