Locus 7325

Sequence ID 2L_DroMel_CAF1
Location 20,471,672 – 20,471,778
Length 106
Max. P 0.892984
window11744

overview

Window 4

Location 20,471,672 – 20,471,778
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.01
Mean single sequence MFE -37.48
Consensus MFE -34.28
Energy contribution -34.32
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.91
SVM decision value 0.97
SVM RNA-class probability 0.892984
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20471672 106 + 22407834
-----CGCCUGCGGUCCACUUGGAAUGGAUCAUCGGAGCAGAGACAACGCACCGAGAGUAUUUUGGGCCAGUCAUAUACCCGGCUAUAUGGCCAUAUAUACG---------GAGGCAAGA
-----.((((.(((((((.......)))))).((((.((.........)).))))..((((....((((((((........)))....)))))....)))))---------.)))).... ( -35.70)
>DroSec_CAF1 24695 106 + 1
-----CGCCUGCGGUCCACUUGGAAUGGAUCAUCGGAGCAGAGACAACGCACCGAGAGUAUUUUGGGCCAGCCAUGUACCCGGCUAUAUGGCCAUAUAUACG---------GAGGCAAGA
-----.((((.(((((((.......)))))).((((.((.........)).))))..((((....((((((((........)))....)))))....)))))---------.)))).... ( -38.40)
>DroSim_CAF1 26627 106 + 1
-----CGCCUGCGGUCCACUUGGAAUGGAUCAUCGGAGCAGAGACAACGCACCGAGAGUAUUUUGGGCCAGCCAUGUACCCGGCUAUAUGGCCAUAUAUACG---------GAGGCAAGA
-----.((((.(((((((.......)))))).((((.((.........)).))))..((((....((((((((........)))....)))))....)))))---------.)))).... ( -38.40)
>DroEre_CAF1 27042 111 + 1
GCCUGCGCCUGCGGUCCACUUGGAAUGGAUCAGCGGAGCAGAGACAACGCACCGAGAGUAUUUUCGGCCAGCCAUGUACCCGGCUAUAUGGCCAUAUAUACG---------GAGGCAAGG
((((((((((((((((((.......)))))).)))).)).(......))).(((.(((....)))((((((((........)))....))))).......))---------))))).... ( -39.20)
>DroYak_CAF1 24158 115 + 1
-----CGCCUGCGGUCCACUUGGAAUGGAUCAUCGGAGCAGAGACAACGCACCGAGAGUAUUUUCGGCCAGCCAUGUACCCGGCUAUAUGGCCAUAUAUACGACGCAAGACGAGGCAAGA
-----.((((.(((((((.......)))))).((((.((.........)).))))..((((....((((((((........)))....)))))....))))..(....)..))))).... ( -35.70)
>consensus
_____CGCCUGCGGUCCACUUGGAAUGGAUCAUCGGAGCAGAGACAACGCACCGAGAGUAUUUUGGGCCAGCCAUGUACCCGGCUAUAUGGCCAUAUAUACG_________GAGGCAAGA
......((((..((((((.......)))))).((((.((.........)).))))..((((....((((((((........)))....)))))....))))...........)))).... (-34.28 = -34.32 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:38 2006