Locus 7324

Sequence ID 2L_DroMel_CAF1
Location 20,471,455 – 20,471,555
Length 100
Max. P 0.894891
window11743

overview

Window 3

Location 20,471,455 – 20,471,555
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.63
Mean single sequence MFE -33.40
Consensus MFE -29.40
Energy contribution -28.96
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.98
SVM RNA-class probability 0.894891
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20471455 100 + 22407834
CAAUUGCCAGGUUCCUCCGCAAAAUACAUAGGCUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGCCGGAGGAGAUGGGAGAU--------------------GCCAUCUAG
............(((((((............((((((((......))).))))).....((((.......)))))))))))(((((.....--------------------.)))))... ( -31.40)
>DroSec_CAF1 24482 100 + 1
CAAUUGCCAGGUUCCUCCGCAGAAUACAUAGGCUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGUCGGAGGAGAUGGGAGAU--------------------GCCAUCUAG
............(((((((((((((((((..((((((((......))).))))).....))).))))))...).)))))))(((((.....--------------------.)))))... ( -31.30)
>DroSim_CAF1 26414 100 + 1
CAAUUGCCAGGUUCCUCCGCAGAAUACAUAGGCUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGCCGGAGGAGAUGGGAGAU--------------------GCCAUCUAG
............(((((((............((((((((......))).))))).....((((.......)))))))))))(((((.....--------------------.)))))... ( -31.40)
>DroEre_CAF1 26808 120 + 1
CAAUUGCCAGGUUCCUCCGCCAAGUACAUAGGUUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGCCGGAGGAGAUGGCAGAUGGGAGAUGGGAGGUGGGCUGGCCAUCUAG
((.((((((..((((((((............((((((((......))).))))).....((((.......)))))))))))).)))))).))..((((((..((....))..)))))).. ( -43.70)
>DroYak_CAF1 23959 100 + 1
CAAUUGCCAGGUUCCUCCGCAAAAUACAUAAGUUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGCCGGAGGAGAUGGGAGAU--------------------GCCAUCUAG
............(((((((............((((((((......))).))))).....((((.......)))))))))))(((((.....--------------------.)))))... ( -29.20)
>consensus
CAAUUGCCAGGUUCCUCCGCAAAAUACAUAGGCUCGCUUGCCAAAAAGCCGAGCAGAUAGUGUUAUUUUUACGCCGGAGGAGAUGGGAGAU____________________GCCAUCUAG
...((.(((..((((((((((((((((((..((((((((......))).))))).....))).))))))...).)))))))).))).))............................... (-29.40 = -28.96 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:37 2006