| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,470,658 – 20,470,778 |
| Length | 120 |
| Max. P | 0.777184 |
| Location | 20,470,658 – 20,470,778 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.13 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -29.38 |
| Energy contribution | -30.18 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20470658 120 + 22407834 AUUAUGCGUGUGCAUCUGUGUGUUAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGUUCCGUGCAGUUUGCAGUUAGCAGUUUUGAAAUUGCAAAGUUCC .......(((((((..((((.(((.....)))..))))..)))))))(((...(((((((((...((((........)))).)))))))))..)))((((((....))))))........ ( -34.90) >DroSec_CAF1 23644 120 + 1 AUUAUGCGUGCGCAUCUGUGUGUUAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGUUCCGUGCAGUUUGCAGUUAGCAGUUUUGAAAUUGCAAAGUUCC .......(((.(((..((((.(((.....)))..))))..))).)))(((...(((((((((...((((........)))).)))))))))..)))((((((....))))))........ ( -31.00) >DroSim_CAF1 25592 120 + 1 AUUAUGCGUGUGCUUCUGUGUGUUAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGUUCCGUGCAGUUUGCAGUUAGCAGUUUUGAAAUUGCAAAGUUCC .......((((((...((((.(((.....)))..))))...))))))(((...(((((((((...((((........)))).)))))))))..)))((((((....))))))........ ( -32.20) >DroEre_CAF1 25920 113 + 1 AUUAUGCGUGUGCAUCUGUGUGUCAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGUGCCGUGCAGUUUGCA-------GUUUUGAAAUUGCAAAGUUCC ....((((((((((..((((.(.(......).).))))..))))))((((((.(((((((((...(((..........))).))))))))).-------.))))))...))))....... ( -31.70) >DroYak_CAF1 23078 113 + 1 AUUAUGCGUGUGCAUCUGUGUGUUAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGCUCCGCGCAGUUUGCA-------GUUCUGAAAUUGCAAAGUUCC ....((((((((((..((((.(((.....)))..))))..)))))))......(((((((((((..((((.....)))).))))))))))).-------...........)))....... ( -35.30) >consensus AUUAUGCGUGUGCAUCUGUGUGUUAGUUAAGCCCUACAUUUGCACAUUAAAAGGCGAACUGUGUUCGGGUGUUUUGUUCCGUGCAGUUUGCAGUUAGCAGUUUUGAAAUUGCAAAGUUCC ....((((((((((..((((.(((.....)))..))))..)))))))......(((((((((...((((........)))).)))))))))...................)))....... (-29.38 = -30.18 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:32 2006