Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,121,153 – 2,121,270 |
Length | 117 |
Max. P | 0.639473 |
Location | 2,121,153 – 2,121,270 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -23.46 |
Energy contribution | -24.06 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.82 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2121153 117 - 22407834 AGGCAUCUCCGCAUCUCCGCGAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA .((((.(..(((((....(((.....))---)..(((..(((((....)))))..)))...(((((((......))))).)).)))).)..).))))....................... ( -29.80) >DroSec_CAF1 121452 117 - 1 AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA .((((.(..(((((.(((.....(((.(---(((........))))....)))...)))..(((((((......))))).)).)))).)..).))))....................... ( -28.50) >DroSim_CAF1 121242 117 - 1 AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA .((((.(..(((((.(((.....(((.(---(((........))))....)))...)))..(((((((......))))).)).)))).)..).))))....................... ( -28.50) >DroEre_CAF1 124138 113 - 1 AGGCAUCUCCGCAUCGCCGCCAUCCCCG---CAUCCUUGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUG---CUGCCCCAAACAAAACUAAGUAAAACA- .((((.(...((((.(((((.......(---((....)))...(((..(((((.....)))))..))).......)))))...)))).)---.))))......................- ( -28.80) >DroYak_CAF1 126448 117 - 1 AGGCAUCUCCGCAUCGUCGCCCUCCCCUUGUCAUCCUUAUGCCUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUG---CUGCCCCAAACAAAACUAAGUAAAACAA .((((.(...((((....(((..(((.(((.((..(....)..)))))..)))...)))..(((((((......))))).)).)))).)---.))))....................... ( -26.80) >consensus AGGCAUCUCCGCAUCGCCGCCAUCCCCG___CAUCCUCGUCCAUGCAAAUGGGUUAGGCCCGUCCGCAACAAAAUGCGGCACAAUGCUGCUGCUGCCCCAAACAAAACUAAGUAAAACAA .((((...(.((((....(((...((((...(((........)))....))))...)))..(((((((......))))).)).)))).)....))))....................... (-23.46 = -24.06 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:11 2006