Locus 7318

Sequence ID 2L_DroMel_CAF1
Location 20,467,004 – 20,467,122
Length 118
Max. P 0.929322
window11724

overview

Window 4

Location 20,467,004 – 20,467,122
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 90.41
Mean single sequence MFE -38.85
Consensus MFE -32.35
Energy contribution -34.60
Covariance contribution 2.25
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.83
SVM decision value 1.20
SVM RNA-class probability 0.929322
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20467004 118 + 22407834
UGUCGCACAAAGGUGCACUAACUGCCAGUGUGUGUGUGUGUGUGUCUCCUAUCACACGCUUGCAACGCUGCUGUUGGCUCUUGAUAUUUGGCUCAGACUGAGCCACGCCCCCUACUCC
((((((((....)))).(((((.((.(((((.((((.(((((((........))))))).))))))))))).))))).....))))..((((((.....))))))............. ( -42.50)
>DroSec_CAF1 19964 118 + 1
UGUCGCACAAAGGUGCACUAACUGCCAGUGUGUGUGUGUGUGUGUCUCCUAUCACACGCUUGCAACGCUGCUGUUGGCUCUUGAUAUUUGGCUCAGACUGAGCCACGCCCCCUCCUCA
((((((((....)))).(((((.((.(((((.((((.(((((((........))))))).))))))))))).))))).....))))..((((((.....))))))............. ( -42.50)
>DroEre_CAF1 22408 106 + 1
UGUCGCACAAAGGUGCACUAACUGCCAGUGUGU--------GUGUCUCCUAUCACAAGCUUGCAACGCUGCUGCUGGCUCUUGAUAUUUGGCUCAGACUGAGCCACGCCCC-UCU---
((((((((....)))).......((((((((.(--------(((........)))).))..(((....))).))))))....))))..((((((.....))))))......-...--- ( -33.50)
>DroYak_CAF1 19627 109 + 1
UGUCGCACAAAGGUGCACUAACUUUCAGUGUGUG------UGUGUCUGCUAUCACACGCUUGCAACGCUGCUGUUGGCUCUUGAUAUUUGGCUCAGACUGAGCCACGCCCCCUCC---
((((((((....)))).(((((...(((((((((------((((........))))))).....))))))..))))).....))))..((((((.....))))))..........--- ( -36.90)
>consensus
UGUCGCACAAAGGUGCACUAACUGCCAGUGUGUG______UGUGUCUCCUAUCACACGCUUGCAACGCUGCUGUUGGCUCUUGAUAUUUGGCUCAGACUGAGCCACGCCCCCUCC___
((((((((....)))).(((((...(((((((((...(((((((........))))))).))).))))))..))))).....))))..((((((.....))))))............. (-32.35 = -34.60 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:19 2006