Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,465,609 – 20,465,729 |
Length | 120 |
Max. P | 0.791557 |
Location | 20,465,609 – 20,465,729 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -23.99 |
Consensus MFE | -19.44 |
Energy contribution | -19.64 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.87 |
Structure conservation index | 0.81 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20465609 120 - 22407834 UUAAGUUGCCCCAAAAGCUUGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA ....(((((....((((.(((..(((........(((((...............))))).........)))..))).))))))))).............(((((((.....))))))).. ( -23.19) >DroSec_CAF1 18577 120 - 1 UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA ....((((((((....((.(....).)).((......)).))).....................((.....))........))))).............(((((((.....))))))).. ( -24.50) >DroSim_CAF1 20497 120 - 1 UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA ....((((((((....((.(....).)).((......)).))).....................((.....))........))))).............(((((((.....))))))).. ( -24.50) >DroEre_CAF1 21215 119 - 1 UUAAGUUGCCCCA-ACGCUCACAAGCGCCCAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCAAGCUGGAGCAA ....((((...))-))((((...(((((((..........))).).................(((..((((.......(((((....)))))......))))..)))...))).)))).. ( -24.02) >DroYak_CAF1 18238 120 - 1 UUAAGUUGCCCCAAACGCUCACAAGCGCACAGUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCAAGAUGGAGCAA .....(((((((....((((((.........))))))...)))...................((((..((((.............))))..........((.....))..))))..)))) ( -23.72) >consensus UUAAGUUGCCCCAAACGCUCGCAAGCGCACAUUGAGUUGAGGGACACAAAAUAACAAUUAAACAUCAAGCUGACAAACUUUGCAACAGCAAACAAACAAGCUACAUGCUAGAUGUAGCAA ....((..(((((...(((((...........))))))).)))..)).....................((((.............))))..........(((((((.....))))))).. (-19.44 = -19.64 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:15 2006