Locus 7313

Sequence ID 2L_DroMel_CAF1
Location 20,464,540 – 20,464,657
Length 117
Max. P 0.814265
window11714

overview

Window 4

Location 20,464,540 – 20,464,657
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.94
Mean single sequence MFE -41.24
Consensus MFE -38.38
Energy contribution -38.30
Covariance contribution -0.08
Combinations/Pair 1.06
Mean z-score -1.27
Structure conservation index 0.93
SVM decision value 0.66
SVM RNA-class probability 0.814265
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20464540 117 + 22407834
CAACCAAAAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCUUGCCCGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGG---CGACAUCCCGGUCCAGGAG
..(((......(((((((((((.(....)))))).....(((((..((((((.((....))))))))..)))))))))))..........((((((..---...)))))))))....... ( -40.90)
>DroSec_CAF1 17539 116 + 1
CAACCA-AAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCUUGCCCGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGG---CGACAUCCCGGUCCAGGAG
..(((.-....(((((((((((.(....)))))).....(((((..((((((.((....))))))))..)))))))))))..........((((((..---...)))))))))....... ( -40.90)
>DroSim_CAF1 19461 116 + 1
CAACCA-AAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCUUGCCCGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGG---CGACAUCCCGGUCCAGGAG
..(((.-....(((((((((((.(....)))))).....(((((..((((((.((....))))))))..)))))))))))..........((((((..---...)))))))))....... ( -40.90)
>DroEre_CAF1 19971 120 + 1
CAACCAAAAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCCCGCCUGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGGAUGGGACAUCCCAGUCCAGGAG
...((...(((((((.((((((.(....)))))))......(((((((((((.((....)))))))....))))))............)))))))((..((((....))))..)).)).. ( -42.80)
>DroYak_CAF1 17155 117 + 1
CAACCAAAAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCCUGCCUGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGG---CGACAUGCCAGUCCAGGAG
...........(((((((((((.(....)))))).....(((((..((((((.((....))))))))..)))))))))))....((((...((((.((---(.....))).)))).)))) ( -40.70)
>consensus
CAACCAAAAUCUCUUCCCGAUGCGUUGGCCAUCGGAUCAGCUUGCCCGAAAGUGCAUUAGCCUUUUGUCUAGGCGGAAGACCAACUCUGAGGGAUGGG___CGACAUCCCGGUCCAGGAG
...((......(((((((((((.(....)))))).....(((((..((((((.((....))))))))..)))))))))))..........((((((........))))))......)).. (-38.38 = -38.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:10 2006