Locus 7311

Sequence ID 2L_DroMel_CAF1
Location 20,463,384 – 20,463,504
Length 120
Max. P 0.655409
window11709

overview

Window 9

Location 20,463,384 – 20,463,504
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -41.23
Consensus MFE -34.84
Energy contribution -34.62
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.21
Structure conservation index 0.84
SVM decision value 0.26
SVM RNA-class probability 0.655409
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20463384 120 + 22407834
UACACGCUGCUGCACUCGAAAAUGAAACGGACAAUAAGCUCCACUUGCCCACUUGCCCACUUGCCCACUGGGUGGCAGAGGGGGGCAGCGGGGGCGUGGCAGCGGGAGGGCGGGAAUGCA
....((((((..(..(((.........))).......(((((..((((((.((((((.....((((...)))))))).))..))))))..))))))..)))))).....(((....))). ( -47.50)
>DroEre_CAF1 18798 101 + 1
UACACGCUGCUGCACUCGAAAAUGAAACGGACAAUAAGCUCCACUUGCCCACUGGG-CGCU------------------UGGGGGCAGAGGGGGCGUGGCGGCGGGAGGGCGGCAAUGCA
....((((((..(..(((.........))).......(((((..((((((.(..(.-...)------------------..)))))))..))))))..)))))).....(((....))). ( -39.60)
>DroYak_CAF1 15957 93 + 1
UACACGCUGCUGCACUCGAAAAUGAAACGGACAAUAAGCUCCACUUGCCCACUG---------------------------GGGGCAGAAGGGGCGUGGCAGCGGGAGGGCGGGAAUGCA
....((((((..(..(((.........))).......(((((..((((((....---------------------------.))))))..))))))..)))))).....(((....))). ( -36.60)
>consensus
UACACGCUGCUGCACUCGAAAAUGAAACGGACAAUAAGCUCCACUUGCCCACUGG__C_CU___________________GGGGGCAGAGGGGGCGUGGCAGCGGGAGGGCGGGAAUGCA
....((((((..(..(((.........))).......(((((..((((((................................))))))..))))))..)))))).....(((....))). (-34.84 = -34.62 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:05 2006