Locus 731

Sequence ID 2L_DroMel_CAF1
Location 2,120,986 – 2,121,083
Length 97
Max. P 0.878996
window1201

overview

Window 1

Location 2,120,986 – 2,121,083
Length 97
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 96.78
Mean single sequence MFE -25.99
Consensus MFE -25.99
Energy contribution -25.99
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 1.00
SVM decision value 0.91
SVM RNA-class probability 0.878996
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2120986 97 - 22407834
AAAUGCUUACAAAGGAUAAA------AAAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
....................------............(((((((((((((.....(((((................))))).....)))))))))))))... ( -25.99)
>DroSec_CAF1 121288 97 - 1
AAAUGCUUACAAAGGAUAAA------AAAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
....................------............(((((((((((((.....(((((................))))).....)))))))))))))... ( -25.99)
>DroSim_CAF1 121082 97 - 1
AAAUGCUUACAAAGGAUAAA------AAAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
....................------............(((((((((((((.....(((((................))))).....)))))))))))))... ( -25.99)
>DroEre_CAF1 123998 97 - 1
AAAUGCUUACAAAGGAUAAA------AAAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
....................------............(((((((((((((.....(((((................))))).....)))))))))))))... ( -25.99)
>DroYak_CAF1 126279 103 - 1
AAAUGCUUACAAAGGAUCAAAAAAAAAGAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
......................................(((((((((((((.....(((((................))))).....)))))))))))))... ( -25.99)
>consensus
AAAUGCUUACAAAGGAUAAA______AAAGGAGGAAAUGUUGCUGUUGCAGCUCCUGUGCUUGACACUUGCAGAUUUAGCGCUUCAUUUGCAGCAGCAGCUGA
......................................(((((((((((((.....(((((................))))).....)))))))))))))... (-25.99 = -25.99 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:10 2006