Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,461,400 – 20,461,520 |
Length | 120 |
Max. P | 0.523035 |
Location | 20,461,400 – 20,461,520 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.83 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -30.26 |
Energy contribution | -30.50 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.15 |
Structure conservation index | 0.92 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20461400 120 - 22407834 CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGCAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA ((((((((((((....)))))))....))))).(.(((((.((((....)))).....(((((....((((.(((.......))).)))).....(......).)))))..))))).).. ( -34.40) >DroSec_CAF1 14391 120 - 1 CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA .(((((((((((....))))))))....(((((......)))))......))).....(((((....((((.(((.......))).)))).....(......).)))))........... ( -32.80) >DroSim_CAF1 16237 120 - 1 CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCUGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA .(((((((((((....))))))))....(((((......)))))......))).....(((((....((((.(((.......))).)))).....(......).)))))........... ( -30.60) >DroEre_CAF1 17050 120 - 1 CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGGAAACCCAGCUCCUUAUUGCCCAA .(((((((((((....))))))))....(((((......)))))......)))....(((.(.((((((.(((.......(((........))).((....))))).)))))).).))). ( -31.70) >DroYak_CAF1 14478 120 - 1 CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUACCUAAAUGGACCAUAAGGCGUUAAAAUGAUGCUAUCGCCCACACGAAAACCCAGGUCCUUAUGGCCCAA .......(.((((((((.....(((...(((((......)))))......))).....(((((....((((((.....)))))).(((......))).......)))))))))))))).. ( -35.50) >consensus CGGCUCAGAGGUCAUAAUUUCUGGUUAAGCCGAGCGUAAUCGGCACUUUUGCCUAAAUGGACCAUAAGGCGUUAAAAUGUUGUUAUCGCCCACACGAAAAGCCAGGUCCUUAUUGCCCAA .(((((((((((....))))))))....(((((......)))))..............(((((....((((.(((.......))).)))).....(......).))))).....)))... (-30.26 = -30.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:59 2006