| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,460,524 – 20,460,620 |
| Length | 96 |
| Max. P | 0.873549 |
| Location | 20,460,524 – 20,460,620 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 84.81 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -18.48 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20460524 96 + 22407834 GAUGUGAUAUAUGAUAUGCGAUAGUAAUUUAUACAUUAC--------AUU--ACAUUUUAGAUUCUUUCUAUCAUUUGUUGGAGAUAUCCUCUGACGAGUGAAGGG ((((((((.(((((..(((....)))..))))).)))))--------)))--......((((.....))))((((((((..(((.....)))..)))))))).... ( -28.20) >DroSec_CAF1 13545 104 + 1 --UAUGAUAUGUGAUAUGCGAUAGUAAUUCAUAGAUUAUUAAGUAUCUUUGCGCAUUUUAGAUUCUUUGUAUCAUUCGUUGGAGAUAUCCUCUGACGAGCGAAGGG --.(((((.(((((..(((....)))..))))).)))))......(((((((........(((.......)))..((((..(((.....)))..))))))))))). ( -27.10) >DroSim_CAF1 15355 104 + 1 --UAUGAUAUGUGAUAUGCGAUAUUAAUUAAUAGAUUAUUAAGUAUCCUUGCGCAUUUUAGAUUCUUUGUAUCAUUCGUUGGAGAUAUCCUCUGACGAGCGAAGGG --..(((.(((((....(.(((((...((((((...))))))))))))...))))).)))...(((((((.....((((..(((.....)))..))))))))))). ( -24.50) >consensus __UAUGAUAUGUGAUAUGCGAUAGUAAUUAAUAGAUUAUUAAGUAUCAUUGCGCAUUUUAGAUUCUUUGUAUCAUUCGUUGGAGAUAUCCUCUGACGAGCGAAGGG ...(((((.(((((..(((....)))..))))).))))).......((((.(((......(((.......)))..((((..(((.....)))..))))))))))). (-18.48 = -18.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:58 2006