Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,460,212 – 20,460,323 |
Length | 111 |
Max. P | 0.985748 |
Location | 20,460,212 – 20,460,323 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.34 |
Mean single sequence MFE | -35.88 |
Consensus MFE | -18.38 |
Energy contribution | -19.22 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.15 |
Mean z-score | -3.16 |
Structure conservation index | 0.51 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20460212 111 + 22407834 UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAGUAAGUACUCCAUUUGGACUAGAAUGGCUUUGGUUUAGUGUGUAUAUACUCGCACCGAGCAAUUAUAUCC ..---------(((((((..(((.(((((((.....((((((.....)))))).......)))))))..)))..))))))).(((..(((((........)))))..))).......... ( -35.20) >DroSec_CAF1 13204 105 + 1 UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG----UACUCCAUUUGGACGAGAAUGGCUUUGGUUUAGU--GCAUAUACUCGCACAGAGCAAUUAUAUCC ..---------(((((((..((..(((((((...((((((((.....))))----)))).)))))))...))..))))))).((((.((--((........)))).)))).......... ( -38.00) >DroSim_CAF1 15017 105 + 1 UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG----UGCUCCAUUUGGACGAGAAUGGCUUUGGCUUAGU--GUAUAUACUCGCACAGAGCAAUUAUAUCC ..---------(((((((..((..(((((((...((..((((.....))))----..)).)))))))...))..))))))).((((.((--((........)))).)))).......... ( -37.50) >DroEre_CAF1 15562 108 + 1 UGAAAUAAGCGAAAGCCAGGCUGUCCAAGUGCCCAGUGCUCUGACCAGGAG----UACUCCAUUUGGAUGGAAAUGGCUGCGGUUCAGU--GUGUAUG------CCGAACAAUUAUAUCG .((.((((((...(((((..(((((((((((...((((((((.....))))----)))).)))))))))))...))))))).((((.((--......)------).))))..)))).)). ( -40.20) >DroYak_CAF1 13494 99 + 1 UG---------AAAGCCAAGCUAACCAAGUGCCAAGUGCUUUGACCAGGAG----UACUCCAUUUGGAUGAAAAUGGGUUUGGUUUAGU--GUGUAUA------CCAAACAAAUGCAUCC ..---------.((((((((((..(((((((...((((((((.....))))----)))).)))))))((....)).))))))))))...--((((((.------........)))))).. ( -28.50) >consensus UG_________AAAGCCAAGCUAACCAAGUGCCAAGUGCUCUGACCAGGAG____UACUCCAUUUGGACGAGAAUGGCUUUGGUUUAGU__GUAUAUACUCGCACCGAGCAAUUAUAUCC ..............((...((((((((((.((((....(((...(((((((......))))...)))..)))..))))))))).)))))..))........................... (-18.38 = -19.22 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:57 2006