Locus 7304

Sequence ID 2L_DroMel_CAF1
Location 20,459,852 – 20,459,972
Length 120
Max. P 0.973747
window11696

overview

Window 6

Location 20,459,852 – 20,459,972
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -35.44
Consensus MFE -31.94
Energy contribution -31.66
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 1.72
SVM RNA-class probability 0.973747
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20459852 120 + 22407834
CUGGGGCAACUAAACGCUCGCCGACAUUUCGGCAGCUGUCAGUUGUUUGCCACUAAACGCUUACAACCAGCGGAAAAAUGCGGAAAUUUUAUAUAAUCAAAUGGCAGCCAAAAGGCGCUU
...((....))...((((.(((((....))))).((((((((((((..((........))..)))))..(((......)))....................))))))).....))))... ( -33.90)
>DroSec_CAF1 12844 120 + 1
CUGGGGCAACUAAACGCUCGCCGACAUUUCGGCAGCUGUCAGUUGUUUGCCACUAAACGCUUACAACCAGCGGAAAAAUGCGGAAAUGUUAUAUAAUCAAAUGGCAGCCAAGAGGCGCUU
...((((........))))(((((((((((.(((.((((..(((((..((........))..)))))..)))).....))).))))))))............))).(((....))).... ( -37.80)
>DroSim_CAF1 14657 120 + 1
CUGGGGCAACUAAACGCUCGCCGACAUUUCGGCAGCUGUCAGUUGUUUGCCACUAAACGCUUACAACCAGCGGAAAAAUGCGGAAAUUUUAUAUAAUCAAAUGGCAGCCAAGAGGCGCUU
...((....))...((((((((((....))))).((((((((((((..((........))..)))))..(((......)))....................)))))))...)).)))... ( -34.50)
>DroEre_CAF1 15213 119 + 1
CUGGGG-GACUAAACGCUCGCCGACAUUUCGGCAGCUGUCGGUUGUUUGCCACUAAACGCUCACAAGCAGCGGAAAAAUGCGGAAAUCUUAUAUAAUCAAAUGGCAGCCGAAAAGCGCUU
.(((..-..)))...((..(((((....))))).(((.(((((....(((((......(((....))).(((......)))....................))))))))))..))))).. ( -34.30)
>DroYak_CAF1 13146 119 + 1
CUGGGG-AACUACACGCUCGCCGACAUUUCGGCAGCUGUCGGUUGUUUGCCACUAAACGCUUACAACCAGCGGAAAAAUGCGGAAAUUUUAUAUAAUCAAAUGGCAGCCCAAAAGCGCUU
.(((..-..)))..((((.(((((....))))).((((((((((((..((........))..)))))).(((......))).....................)))))).....))))... ( -36.70)
>consensus
CUGGGGCAACUAAACGCUCGCCGACAUUUCGGCAGCUGUCAGUUGUUUGCCACUAAACGCUUACAACCAGCGGAAAAAUGCGGAAAUUUUAUAUAAUCAAAUGGCAGCCAAAAGGCGCUU
...((....))...((((.(((((....))))).((((((((((((..((........))..)))))..(((......)))....................))))))).....))))... (-31.94 = -31.66 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:54 2006