Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,458,979 – 20,459,086 |
Length | 107 |
Max. P | 0.509443 |
Location | 20,458,979 – 20,459,086 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -16.56 |
Consensus MFE | -11.02 |
Energy contribution | -10.78 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20458979 107 + 22407834 AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCUCUCGCUCGGCUCCUCUCUUUCUCUUUUUGUUU (((((.((.....((-------------((.........))))..)).))))).........((((((((..((.((((...........)))).))..)))............))))). ( -17.70) >DroSec_CAF1 12020 107 + 1 AGCGAUUUUCCCUUG-------------CCAUUUUCGCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUUCUGCUA (((((.((.....((-------------((.........))))..)).)))))...(((...((.((((((.....)).........((......)).......)))).))....))).. ( -15.50) >DroSim_CAF1 13842 107 + 1 AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUUCUGCUU (((((.((.....((-------------((.........))))..)).)))))...(((...((.((((((.....)).........((......)).......)))).))....))).. ( -15.50) >DroEre_CAF1 14486 84 + 1 AGCGAUUUUCCCUUG-------------CCAUUUUCCCCGGCAUUAAUUCGCCUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGC----------------------- .((((........((-------------((.........)))).......((((((((....).)))))))......................))))----------------------- ( -18.40) >DroYak_CAF1 12302 110 + 1 AGCGAUUUUCCCUUGCGAUUUUCCCUUACCAUUUUCCCCGGCAUUAAUUCGCCUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGCCCCCUCUCUUUCU---------- .((((.......)))).......................(((........((((((((....).)))))))((.....))...............)))............---------- ( -15.70) >consensus AGCGAUUUUCCCUUG_____________CCAUUUUCCCCGGCAUUAAUUCGCUUUUGCAACCGACAAAGGCACUUAGCGUCUCACUCCCUCACUCGGCCCCUCUCUUUCUCUUU_UG_U_ .......................................(((.((((...((((((((....).)))))))..)))).)))....................................... (-11.02 = -10.78 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:51 2006