Locus 7301

Sequence ID 2L_DroMel_CAF1
Location 20,458,222 – 20,458,340
Length 118
Max. P 0.577652
window11692

overview

Window 2

Location 20,458,222 – 20,458,340
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.09
Mean single sequence MFE -35.70
Consensus MFE -17.16
Energy contribution -18.84
Covariance contribution 1.68
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.48
SVM decision value 0.09
SVM RNA-class probability 0.577652
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20458222 118 - 22407834
AAUGUGUUACCAAUUUCUUUGAGUGCCUGGUGGGGGUUGUCCAGCUGUUGUCAGGCUCCUCGCACCUC--CUCCACAGCUCCACAGCCAACUGACACUGGUUGACAACACCUCCCAAGCA
........(((((.....))).))((.(((.((((((((((.((((..((((((((.....)).....--.......(((....)))...))))))..)))))))))).))))))).)). ( -37.30)
>DroSec_CAF1 11111 120 - 1
AAUGCAUUACCAAUUUCUUGAAGUGCCUGGUAGGGAUUGUCCAACUGUUGUCAGGCUCCUCGCUGCACAGCUCCAGAGCCCCACAUCCAACUGACACUGGUUGACACCACCUCCCCAGCA
...(((((..(((....))).)))))((((..(((..((((.((((..((((((((((...(((....)))....)))))...........)))))..))))))))...)))..)))).. ( -34.40)
>DroSim_CAF1 12784 112 - 1
AAUGGGUUACCAGUUUCUUUAAGUGCCUGGUGGGGAUUGUCCAACUGUUGUCAGGCUCCUCGCUCCACAGCUCCA--------CUGCCAACUGACACUGGUUGACACCACCUCCCCAGCU
..((((..(((((...(.....)...)))))((((..((((.((((..((((((((.....))......((....--------..))...))))))..))))))))...))))))))... ( -33.00)
>DroEre_CAF1 13607 100 - 1
AAUGGGCCACCAAUUUGUUCAAGUGCCUGGUGGGGGUGCUCCAGCUGUUGUCAGGCUGCUCGCUCCACAG-----------------CAACCGACUCUGGUGGACACCACCCACCAA---
...((((.((............))))))((((((((((.((((.(....(((.((.((((........))-----------------)).)))))...).)))))))).))))))..--- ( -40.40)
>DroYak_CAF1 11440 103 - 1
AACGGGUUACCAAUUCGCUCAAGUGCCUCGUGGGUGAGCUCCAGCUGUUGUCAGGCUCCUCGCUCCGCAG-----------------CAACUGACACUGGUUGGCACCACCUACCAAGCA
...((....))............(((...(((((((.(..((((((..(((((((((.(.......).))-----------------)..))))))..))))))..))))))))...))) ( -33.40)
>consensus
AAUGGGUUACCAAUUUCUUCAAGUGCCUGGUGGGGGUUGUCCAGCUGUUGUCAGGCUCCUCGCUCCACAGCUCCA________C__CCAACUGACACUGGUUGACACCACCUCCCAAGCA
........................((.(((.(((...((((.(((((.((((((....................................)))))).)))))))))...))).))).)). (-17.16 = -18.84 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:50 2006