Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 261,991 – 262,098 |
Length | 107 |
Max. P | 0.938720 |
Location | 261,991 – 262,098 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 64.94 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -14.70 |
Energy contribution | -15.08 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.21 |
Mean z-score | -2.02 |
Structure conservation index | 0.47 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 261991 107 + 22407834 AAAGGGGUCCUUCGCGAGGCAGCAACAUUUGCAAGGCAAG-------------UUGCAUACAAUCCGCCGACAGGCGGACUCAACUAAAACUUGUUAAUUGGAAACAAAGCUAUGAGGAG .......(((((.(((((...(((((..((((...)))))-------------))))......((((((....)))))))))................(((....))).))...))))). ( -33.60) >DroSim_CAF1 55435 82 + 1 AAUGGGGACCUCCGCAAGGCAGCAACAUUUGCA-GGCAAG-------------UUUGCUGCGAUCCGCCGACAGGCGGACUCAACUUAAAUUCGUU------------------------ ..((.((....)).))..(((((((.(((((..-..))))-------------))))))))((((((((....)))))).))..............------------------------ ( -31.90) >DroEre_CAF1 59804 109 + 1 UAAGGAGGCCUCCGUGAGGCAACGACAUUUUCA-G-CAAGCCAACCCUCUUAAUUGG-AGCAAUACGCCGACAGGCGGACACAGCUCAAAUUCGUUAAUUGGGAACAACAAC-------- ...((..(((((...)))))...((.....)).-.-....))..(((..(((((..(-(((....((((....))))......))))......)))))..))).........-------- ( -27.20) >DroYak_CAF1 57497 119 + 1 UAAGGAUACCUCCGUGAGGCAUCAACAUUUGCA-GGUGAGCCAACCCAUUUAUUUGACUGCAUUCCGCCGACAGGCGGACACAACUCAAAUUCGUUAAUUGGAAACAACACUAUGAAGAG ...(((....))).(((((((((((........-(((......))).......)))).)))..((((((....)))))).....))))..(((((...(((....)))....)))))... ( -31.56) >consensus AAAGGAGACCUCCGCGAGGCAGCAACAUUUGCA_GGCAAG_____________UUGGCUGCAAUCCGCCGACAGGCGGACACAACUCAAAUUCGUUAAUUGGAAACAACACU________ ...(((....)))..(((((((......))))...............................((((((....)))))).....)))...........(((....)))............ (-14.70 = -15.08 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:04 2006