Locus 7299

Sequence ID 2L_DroMel_CAF1
Location 20,454,963 – 20,455,081
Length 118
Max. P 0.525730
window11688

overview

Window 8

Location 20,454,963 – 20,455,081
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.03
Mean single sequence MFE -38.99
Consensus MFE -32.50
Energy contribution -32.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.83
SVM decision value -0.02
SVM RNA-class probability 0.525730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20454963 118 + 22407834
--AUCCAAAUCCUUGUCAGCGCCUUGGCGAAACUGCCUGGCGAGAGGAGCAAGUGGAGCUUAGCUGUCGGGCUGAUCGCAUUUUGAGCUGACAAGCCCGACAAACCCGAGCCCGAGUCGU
--.((((..(((((.....((((..((((....)))).)))).))))).....))))(((..(.(((((((((..((((.......)).))..)))))))))...)..)))......... ( -46.70)
>DroSim_CAF1 9598 103 + 1
--AUCCAUAUCCUUGUCAGCGCCUUGGCGAAAUUGCCUGGCAAGAGGAGCAAGUGGAGCUUAGCUGUCGGGCUGAUCGCAUUUUGAGCUGACAAGC---------------CCGAGUCGU
--.........(((((((((......((((....((((((((.(..((((.......))))..)))))))))...)))).......))))))))).---------------......... ( -39.72)
>DroEre_CAF1 9955 105 + 1
ACAUCCAUAUCCUUGUCAGCGCCUUGGCGAAAUUGCCUGGC---------AAGUGGAGCUUAGCUGUCGGGCUGAUCGCAUUUUGAGCUGACAAGCC------ACCCGAGCCCGAGUCGU
...........(((((((((......((((....(((((((---------(.((........))))))))))...)))).......)))))))))..------((.((....)).))... ( -34.82)
>DroYak_CAF1 8201 103 + 1
--AUCCAUAUCCUUGUCAGCGCCUUGGCGAAAUUGCCUGGC---------AAGUGGAGCUUAGCUGUCGGGCUGAUCGCAUUUUGAGCUGACAAGCC------ACCCAAGCCCGAGUCGU
--.........(((((((((......((((....(((((((---------(.((........))))))))))...)))).......)))))))))..------................. ( -34.72)
>consensus
__AUCCAUAUCCUUGUCAGCGCCUUGGCGAAAUUGCCUGGC_________AAGUGGAGCUUAGCUGUCGGGCUGAUCGCAUUUUGAGCUGACAAGCC______ACCCGAGCCCGAGUCGU
...........((((((((((((..((((....)))).)))...........((((...((((((....)))))))))).......)))))))))......................... (-32.50 = -32.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:46 2006