Locus 7297

Sequence ID 2L_DroMel_CAF1
Location 20,454,014 – 20,454,134
Length 120
Max. P 0.792246
window11683

overview

Window 3

Location 20,454,014 – 20,454,134
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.25
Mean single sequence MFE -26.85
Consensus MFE -20.62
Energy contribution -21.18
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value 0.59
SVM RNA-class probability 0.792246
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20454014 120 - 22407834
AAAUUGCAUUUUUUCCGCCUCGAUAAAUUGUCAAAUCUGCGAAUCAACAACAACUAAUCUUUCGUGGCGAGGAUUACAUGCAUAAAUGUAAUAGCCGGUUAACGCUUCAUAAAAUUGCAC
....((((.((((.((((((((((.....)))....(..((((.................))))..).))))(((((((......)))))))...)))............)))).)))). ( -23.15)
>DroSec_CAF1 7123 120 - 1
AAAUUGCAUUUUUUCCGCCUCGAUAAAUUGUCAAAUCUGCGAAUCAACAACAACUAAUCUUUCGGGGUGGGGAUUACAUGCAUAAAUGUAAUACCCGAUUAACGCUUCAUAAAAUUGCAC
....((((.((((..((((((((......................................))))))))((((((((((......))))))).)))..............)))).)))). ( -26.46)
>DroSim_CAF1 8634 120 - 1
AAAUUGCAUUUUUUCCGCCUCGAUAAAUUGUCAAAUCUGCGAAUCAACAACAACUAAUCUUUCGGGGCGGGGAUUACAUGCAUAAAUGUAAUACCCGGUUAACGCUUCAUAAAAUUGCAC
....((((.((((..((((((((......................................))))))))((((((((((......))))))).)))..............)))).)))). ( -28.36)
>DroEre_CAF1 9055 120 - 1
AAAUUGCAUUUUUUGUGCUUCAAUAAAUUGUCAAAUCUGCGAGUCCACAACAACUAAUCUUUCGGGGCGGGGAUUACAUGCAUAAAUGUAAUGCCCGGUUAACGCUUCAUGAAAUUGCAC
....((((..(((..((...(((....)))........(((.((((..................))))(((.(((((((......))))))).)))......)))..))..))).)))). ( -27.57)
>DroYak_CAF1 7273 119 - 1
AAAUUGCAUUUUUUCUGCCUCAACAAAUCGUCAAAUCUGCGAGUGAACAACAACUAAACCUUCG-GGCGGGGAUUACAUGCAUACAUGUAAUACCCAGUUAACGCUUCAUAAAAUUGCAU
....((((.((((...((.........((((.......))))((.(((..........((....-)).(((.((((((((....)))))))).))).))).)))).....)))).)))). ( -28.70)
>consensus
AAAUUGCAUUUUUUCCGCCUCGAUAAAUUGUCAAAUCUGCGAAUCAACAACAACUAAUCUUUCGGGGCGGGGAUUACAUGCAUAAAUGUAAUACCCGGUUAACGCUUCAUAAAAUUGCAC
....((((.((((...(((((((....((((.......))))...................)))))))(((.(((((((......))))))).)))..............)))).)))). (-20.62 = -21.18 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:42 2006