| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,452,132 – 20,452,237 |
| Length | 105 |
| Max. P | 0.933780 |
| Location | 20,452,132 – 20,452,237 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.26 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -4.05 |
| Energy contribution | -4.45 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.16 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20452132 105 + 22407834 CAGAUGGCGUUAAAGGCACAUGAACGGGAUUGAGAGUAAAAUACCGAGAAUGUAAAAAACACGGGCAAAUGUAAAGUUCA-----------UGUGUCGAAAUGAUGUAAAUAUACG---- ......((((((..(((((((((((((.(((........))).))..(..(((.......)))..).........)))))-----------))))))....)))))).........---- ( -24.40) >DroSec_CAF1 5176 116 + 1 CAGAUGGCGUUAAAGUCACAUGAACAUGAUUGAGCGUAAAAUACCUAUAAUGUAAAAUACAUAGGCACAUGUAAAGUUCAUGUGCCCUUCAUGUGUCGAAAUGAUGUAAAUAUACG---- ......((((((..(.(((((((((((.....((.(((...)))))...))))..........((((((((.......))))))))..))))))).)....)))))).........---- ( -29.40) >DroSim_CAF1 6667 116 + 1 CAGAUGGCGUUAAAGUCACAUGAACGGGAUUGAGCGUAAAAUACCUAAAAUGUAAAAUACAUAGGCACAUGUAAAGUUCAUGUGCCCUUCAUGUGUCGAAAUGAUGUAAAUAUACG---- ......((((((..(.((((((((.((((((........))).)))...(((((...))))).((((((((.......)))))))).)))))))).)....)))))).........---- ( -30.50) >DroEre_CAF1 7165 96 + 1 CAGAUGGCGCCAAAAAGACUUGAACGGUGUUGAGAGUUAAAUUCCGACAAUGUAA------------AAUGUAAAGUUCA-----------UGUGUCGUAACGAUGUAAAAAUACGCAA- ...(((((((......(((((..(((.(((((.((((...)))))))))......------------..))).)))))..-----------.)))))))...(.((((....)))))..- ( -14.70) >DroYak_CAF1 5296 109 + 1 CAGAUGGCGCCAAAAAGACUUGAAAAGUGUUGAGAGUAAAAUGCCGAUAAUGUAAAGUGCUCUAGCAAAUGUAGGUUUCC-----------UGUGUCGUAAUUAUGUAAAAACAUGAACU ...(((((((.....(((((((.....((((.((((((...(((.......)))...))))))))))....)))))))..-----------.)))))))..((((((....))))))... ( -25.10) >consensus CAGAUGGCGUUAAAGACACAUGAACGGGAUUGAGAGUAAAAUACCGAUAAUGUAAAAUACACAGGCAAAUGUAAAGUUCA___________UGUGUCGAAAUGAUGUAAAUAUACG____ ....((((((..........(((((((.(((........))).))...................((....))...)))))............))))))...................... ( -4.05 = -4.45 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:41 2006