Locus 7295

Sequence ID 2L_DroMel_CAF1
Location 20,450,682 – 20,450,802
Length 120
Max. P 0.918836
window11680 window11681

overview

Window 0

Location 20,450,682 – 20,450,802
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -41.54
Consensus MFE -39.64
Energy contribution -39.64
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -1.11
Structure conservation index 0.95
SVM decision value 0.29
SVM RNA-class probability 0.668652
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20450682 120 + 22407834
AAUCCGGUAUUCUGGGCGAAGAGUUCGAUGUCCCCCUCGUUGCCCGUGUAGAAGAAAAUCGGGGUGCGGGCAUUGCUCUUGUCCACGAACGAGUCGUUGUACAAGUACCGGAUGUUGAAG
.((((((((((..((((.((((((..(((((((((((((.....(........).....))))).).)))))))))))))))))((((.....))))......))))))))))....... ( -43.80)
>DroSec_CAF1 3668 120 + 1
AAUCCGGUAUUCUGGGCGAAGAGUUCGAUGUCCCCCUCGUUGCCCGUGUAGAAGAAGAUCGGGGUGCGGGCAUUGCUCUUGUCCACGAAUGAGUCGUUGUACAGAUACCGGAUGUUGAAG
.((((((((((..((((.((((((..(((((((((((((.....(........).....))))).).)))))))))))))))))((((.....))))......))))))))))....... ( -44.20)
>DroSim_CAF1 3722 120 + 1
AAUCCGGUAUUCUGGGCGAAGAGUUCGAUGUCCCCCUCGUUGCCCGUGUAGAAGAAGAUCGGGGUGCGGGCAUUGCUCUUGUCCACGAAUGAGUCGUUGUACAGAUACCGGAUGCUGAAG
.((((((((((..((((.((((((..(((((((((((((.....(........).....))))).).)))))))))))))))))((((.....))))......))))))))))....... ( -44.20)
>DroEre_CAF1 5925 120 + 1
AAACCGGUGUUCUGGGCGAAAAGUUCGAUGUCCCCCUCGUUGCCCGUGUAAAAGAAGAUCGGGGUGCGGUCAUUGCUCUUGUCCACGAAAGAGUCGUUGUACAAGUACCGGAUGUUGAAG
...(((((.((((((((((..((...(....)...))..)))))).......)))).)))))(((((.((((..((((((........))))))...)).))..)))))........... ( -34.01)
>DroYak_CAF1 3716 120 + 1
AAUCCGGUAUUCUGGGCGAAAAGUUCGAUGUCCCCCUCGUUGCCUGUGUAAAAGAAGAUCGGGGUGCGGGCAUUGCUCUUGUCCACGAAAGAGUCGUUGUACAAAUACCGGAUGUUGAAG
.((((((((((.((((((...((..((((((((((((((((..((.......))..)).))))).).))))))))..))))))))(....)............))))))))))....... ( -41.50)
>consensus
AAUCCGGUAUUCUGGGCGAAGAGUUCGAUGUCCCCCUCGUUGCCCGUGUAGAAGAAGAUCGGGGUGCGGGCAUUGCUCUUGUCCACGAAAGAGUCGUUGUACAAAUACCGGAUGUUGAAG
.((((((((((..((((.((((((..(((((((((((((.....(........).....))))).).)))))))))))))))))((((.....))))......))))))))))....... (-39.64 = -39.64 +   0.00)

alignment

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secondary structure

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dotplot

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Window 1

Location 20,450,682 – 20,450,802
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -35.50
Consensus MFE -31.00
Energy contribution -31.48
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -1.59
Structure conservation index 0.87
SVM decision value 1.12
SVM RNA-class probability 0.918836
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20450682 120 - 22407834
CUUCAACAUCCGGUACUUGUACAACGACUCGUUCGUGGACAAGAGCAAUGCCCGCACCCCGAUUUUCUUCUACACGGGCAACGAGGGGGACAUCGAACUCUUCGCCCAGAAUACCGGAUU
.......(((((((((((((...((((.....))))..))))).((..((((((......((......))....))))))..((((((.........))))))))......)))))))). ( -38.80)
>DroSec_CAF1 3668 120 - 1
CUUCAACAUCCGGUAUCUGUACAACGACUCAUUCGUGGACAAGAGCAAUGCCCGCACCCCGAUCUUCUUCUACACGGGCAACGAGGGGGACAUCGAACUCUUCGCCCAGAAUACCGGAUU
.......((((((((((((....((((.....))))((..(((((...((((((......((......))....)))))).(((.(....).)))..)))))..))))).))))))))). ( -39.20)
>DroSim_CAF1 3722 120 - 1
CUUCAGCAUCCGGUAUCUGUACAACGACUCAUUCGUGGACAAGAGCAAUGCCCGCACCCCGAUCUUCUUCUACACGGGCAACGAGGGGGACAUCGAACUCUUCGCCCAGAAUACCGGAUU
.......((((((((((((....((((.....))))((..(((((...((((((......((......))....)))))).(((.(....).)))..)))))..))))).))))))))). ( -39.20)
>DroEre_CAF1 5925 120 - 1
CUUCAACAUCCGGUACUUGUACAACGACUCUUUCGUGGACAAGAGCAAUGACCGCACCCCGAUCUUCUUUUACACGGGCAACGAGGGGGACAUCGAACUUUUCGCCCAGAACACCGGUUU
.........(((((.(((((...((((.....))))..))))).((.......))....................((((...((.(....).))((.....)))))).....)))))... ( -28.90)
>DroYak_CAF1 3716 120 - 1
CUUCAACAUCCGGUAUUUGUACAACGACUCUUUCGUGGACAAGAGCAAUGCCCGCACCCCGAUCUUCUUUUACACAGGCAACGAGGGGGACAUCGAACUUUUCGCCCAGAAUACCGGAUU
.......(((((((((((......(((....(((((((.((.......)).)))).(((((.....).........(....)..))))......)))....)))....))))))))))). ( -31.40)
>consensus
CUUCAACAUCCGGUAUUUGUACAACGACUCAUUCGUGGACAAGAGCAAUGCCCGCACCCCGAUCUUCUUCUACACGGGCAACGAGGGGGACAUCGAACUCUUCGCCCAGAAUACCGGAUU
.......((((((((((((....((((.....))))((..(((((...((((((......((......))....)))))).(((.(....).)))..)))))..))))).))))))))). (-31.00 = -31.48 +   0.48)

alignment

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secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:40 2006