Locus 7292

Sequence ID 2L_DroMel_CAF1
Location 20,433,808 – 20,433,913
Length 105
Max. P 0.527217
window11673

overview

Window 3

Location 20,433,808 – 20,433,913
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 89.95
Mean single sequence MFE -20.15
Consensus MFE -16.85
Energy contribution -18.85
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.527217
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20433808 105 + 22407834
GGAAACCAAGUGAACGUACUUGUUGCAGCAACAACAAGCUAUGUAUUUACAAUACUCAUUUUUGAUAUCAUUCCCAUUGGUAACGUACGGAUUCCAUUGUAGAUA
((((.((..((((((((((((((((......))))))).)))))..))))..((((((....)))(((((.......)))))..))).)).)))).......... ( -24.20)
>DroSec_CAF1 5089 105 + 1
GGAAACCAAGUGAACGUACUUGUUGCAGCAACAACAAGCUAUGUACUUACAAUACUCAUUUUUGAUAUCAUUCCCAUUGGUAACGUACGGAUUCCAUUGUAGAUA
((((.((..((((((((((((((((......))))))).)))))..))))..((((((....)))(((((.......)))))..))).)).)))).......... ( -24.20)
>DroEre_CAF1 4957 92 + 1
GGAAACCAAGUGAACGUACU-------------ACAAGAUAUGUAUUUACAAUACUCAUUUUUGAUAUCAUUCCCAUUGGUAACGUACGGAUUCCAUUGUAGAUA
((((.((..(....)((((.-------------.(((((...((((.....))))....))))).(((((.......)))))..)))))).)))).......... ( -18.10)
>DroYak_CAF1 6064 92 + 1
GGAAACCAAGUGAACCUACU-------------ACAAGAUAUGUAUUUACAAUACUCAUUUUUGAUAUCAUUCCCAUUGGUAACGUACGGAUUCCAUUGUAGAUA
((((.((.((((....))))-------------.(((((...((((.....))))....))))).(((((.......)))))......)).)))).......... ( -14.10)
>consensus
GGAAACCAAGUGAACGUACU_____________ACAAGAUAUGUAUUUACAAUACUCAUUUUUGAUAUCAUUCCCAUUGGUAACGUACGGAUUCCAUUGUAGAUA
((((.((..((((((((((((((((......))))))).)))))..))))..((((((....)))(((((.......)))))..))).)).)))).......... (-16.85 = -18.85 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:33 2006