Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,431,672 – 20,431,774 |
Length | 102 |
Max. P | 0.963151 |
Location | 20,431,672 – 20,431,774 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 64.38 |
Mean single sequence MFE | -29.11 |
Consensus MFE | -12.58 |
Energy contribution | -13.06 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.50 |
Mean z-score | -2.22 |
Structure conservation index | 0.43 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20431672 102 - 22407834 AACAUUAGGCCUAAGUUGGGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACCUGGCUAGCUCAGGGGGGAAAUGCUGGGAUGCUGGAUUGCUGGGAGGGAAAG ..((((..((((.(((((....))))).)))).))))((((((((.....(..((...(((((.(......).)))))..))..).))))))))........ ( -35.50) >DroPse_CAF1 10480 86 - 1 AACUUUCGACCCAAGCUGCGUUCACCUAAAAGAAAUCUCUGACAGAGAAUUUACAAAUCCUUGAAGCAUCUGCUGA----------------AGUUGGGGAA ...(..((((...((((((.((((........(((((((.....))).)))).........)))))))...)))..----------------.))))..).. ( -16.43) >DroSec_CAF1 3055 99 - 1 AACUUUGAGCCUAAGUUGGGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACCUGGCUAGCUCAACGGGGAAAUGUUGGGAUGCCGGG---AUGGAGUUGAAAG ..((((.((((((.(((((((((.((....)).)).)))))))......((((((...(((((((......)))))))..))))))---.))).))).)))) ( -39.80) >DroEre_CAF1 2927 86 - 1 AACUUUAGGCCUAAGUUGAGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAAUGGGGAAACGCUG----------------GAAGGGAAAG ..((((.(((....((((((((.(((.(((((...(((...)))....))))))))))))))))..(....)))).----------------))))...... ( -26.00) >DroYak_CAF1 4100 86 - 1 AACUUUAGGCCUAGGUUGAGUUCAGCUUAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAACGGGAAACUUCUA----------------GAGGGGAAAG ..((((((((((((((((....)))))))))).((.((..(((.((....)).))).))))...((....)).)))----------------)))....... ( -27.80) >consensus AACUUUAGGCCUAAGUUGAGUUCAGCUCAGGUAGAUGCCCAGCGGAAAACUUGGCUAGCUCAACGGGGAAAUGCUG________________GAAGGGAAAG .........(((..((((((((.(((.(((((...(((...)))....)))))))))))))))))))................................... (-12.58 = -13.06 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:32 2006