Locus 7285

Sequence ID 2L_DroMel_CAF1
Location 20,408,889 – 20,409,001
Length 112
Max. P 0.852870
window11654

overview

Window 4

Location 20,408,889 – 20,409,001
Length 112
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.96
Mean single sequence MFE -20.94
Consensus MFE -16.60
Energy contribution -15.43
Covariance contribution -1.17
Combinations/Pair 1.39
Mean z-score -1.21
Structure conservation index 0.79
SVM decision value 0.80
SVM RNA-class probability 0.852870
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20408889 112 + 22407834
-----AAGUCACCUGUGGAGUCAAAGUGGCAUGUUUUAAAUUACA--AUUUGAAUUGUGUCUCAAAUGCUCCAAUAUCAACAAGAUAUGCGAACGGCAUCCUGAAUAAUCAAUCAUAUU
-----..(((.....((((((....(.(((((..(((((((....--)))))))..))))).)....))))))(((((.....)))))......)))...................... ( -22.20)
>DroPse_CAF1 3549 119 + 1
UUUCGAAUCAACUUUUGGAGCCAAAGUGGCAUAUUUCUGAACAAACCUUCAGAUUUGUGUCUCAAAUACUCCAAUAAAAACUAGAUAGACGAACGGCAUCCUGAAUAAUCCCUCAUAUU
.((((.........((((((.......((((((..((((((......))))))..)))))).......))))))......((....)).))))(((....)))................ ( -23.24)
>DroSec_CAF1 3612 111 + 1
-----AAGUCACGUGUGGAGUCAAAGUGGCAUGUUUUAAAUUAUA--AUUUGAUUUGUGUCUCAAAUGCUCCAAUAUCAACAUGAUAUCCGAACGGCAUCCUGCAUAAUC-AUCAUAUU
-----......(((.((((((....(.((((((..((((((....--))))))..)))))).)....))))))(((((.....)))))....)))((.....))......-........ ( -22.30)
>DroSim_CAF1 4583 111 + 1
-----AAGUCACCUGUGGAGUCAAAGUGGCAUGUUUUAAAUUAUA--AUUUGAUUUGUGUCUCAAAUACUCCAAUAUCAACAAGAUAUCCGAACGGCAUCCUGCAUAAUC-AUCAUAUU
-----..(((.....((((((....(.((((((..((((((....--))))))..)))))).)....))))))(((((.....)))))......))).............-........ ( -21.40)
>DroMoj_CAF1 2517 108 + 1
----------ACCCACGGAGUCAAAGUGGCAUAUUUUGAAAUAUAAAUUACGAUUUGUGUCUCAAAUGCUCCAAAAUCAAUUU-AUAGACGAACGGCAUCCUGUUUAAUUAUUCAUAUU
----------......(((((....(.((((((..(((.(((....))).)))..)))))).)....)))))...........-......((((((....))))))............. ( -19.50)
>DroPer_CAF1 3240 101 + 1
------------------AGCUAAAGUGGCAUAUUUCUGAACAAACCUUCAGAUUUGUGUCUCAAAUACUCCAAUAAAAACUAGAUAGACGAACGGCAUCCUGAAUAAUCCCUCGUAUU
------------------.......(.((((((..((((((......))))))..)))))).).........................((((..((.((........)).))))))... ( -17.00)
>consensus
_____AAGUCACCUGUGGAGUCAAAGUGGCAUAUUUUAAAAUAUA__AUUUGAUUUGUGUCUCAAAUACUCCAAUAUCAACAAGAUAGACGAACGGCAUCCUGAAUAAUC_AUCAUAUU
................(((((....(.((((((..((((((......))))))..)))))).)....)))))............................................... (-16.60 = -15.43 +  -1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:16 2006