| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,407,515 – 20,407,617 |
| Length | 102 |
| Max. P | 0.978429 |
| Location | 20,407,515 – 20,407,617 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -17.92 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20407515 102 + 22407834 AGUACGAUU---UAGGAGCCAAAGUGGCAUGCCUUGGAACUUUUA-UCCAAUUUGUGUCUCUAAUGCUCCGAUACUAAUUAUACAAACGAACGGCAUCCUGUUUGA .(((..(((---..(((((...((.((((((..(((((.......-)))))..)))))).))...)))))......)))..)))...(((((((....))))))). ( -29.50) >DroPse_CAF1 1965 106 + 1 AGUAUUGUUUUCCUGGAGCCAAAGUGGCAUAUUUCUGAACCAACCUUCAGAUUUGUGUCUCAAAUACUCCGAUAAUAACACGAUAGACGAACGGCAUCCUGAAUAA ....((((((....((((((...(.((((((..((((((......))))))..)))))).)...................((.....))...))).))).)))))) ( -25.10) >DroSec_CAF1 2164 102 + 1 ACUACGAGU---UAGGAGCCAAAGUGGCAUAUUUUGGAACUUUUA-UCCAAUUUGUGUCUCUAAUGCUCCGAUACUAACUAUACAGACGAACGGCAUCCUGUUUGA ......(((---..(((((...((.((((((..(((((.......-)))))..)))))).))...)))))...)))...........(((((((....))))))). ( -31.60) >DroSim_CAF1 3157 102 + 1 ACCACGAGU---UAGGAGCCAAAGUGGCAUAUUUUGGAACAUUGA-UAUAAUUUGUGUCUCUAAUGCUCCGAUACUAACUAUACAGACGAACGGCAUCCUGUUUGA ......(((---(((..(((.....))).....(((((.((((((-(((.....)))))...)))).)))))..)))))).......(((((((....))))))). ( -26.30) >DroAna_CAF1 2139 102 + 1 AAUACAAUU---CUGGAGUCAAAGUGGCAUAUUUGCGCAUUAUCC-UCUCAUCUGUGUCUCAAAAACUCCCAGAUUAAGUUUCUAGACGAACGGCAUCCUGAAUAA ......(((---(.((((((..(((((((....))).))))....-.........(((((...(((((.........)))))..)))))...))).))).)))).. ( -19.80) >DroPer_CAF1 3059 106 + 1 AGUAUUGUUUUCCUGGAGCCAAAGUGGCAUAUUUCUGAACAAACCUUCAGAUUUGUGUCUCAAAUACUCCAAUAAAAACUAGAUAGACGAACGGCAUCCUGAAUAA ....((((((....((((((...(.((((((..((((((......))))))..)))))).).................((....))......))).))).)))))) ( -24.20) >consensus AGUACGAUU___CAGGAGCCAAAGUGGCAUAUUUUGGAACUAUCA_UCAAAUUUGUGUCUCAAAUACUCCGAUACUAACUAUACAGACGAACGGCAUCCUGAAUAA ..............(((((....(.((((((..(((((........)))))..)))))).)....))))).................................... (-17.92 = -17.45 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:15 2006