Locus 7282

Sequence ID 2L_DroMel_CAF1
Location 20,406,891 – 20,406,992
Length 101
Max. P 0.910869
window11649

overview

Window 9

Location 20,406,891 – 20,406,992
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.64
Mean single sequence MFE -19.38
Consensus MFE -13.98
Energy contribution -13.57
Covariance contribution -0.41
Combinations/Pair 1.13
Mean z-score -1.23
Structure conservation index 0.72
SVM decision value 1.07
SVM RNA-class probability 0.910869
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20406891 101 + 22407834
UC------AUAUGGAGAAAAAGUUUACAUGCUAAAGUAUU---UUUCUUUUCCGUGUCUACAAUGCUCCAAUAUUAAUUGA--------ACGUCUAAAUCAUCUUGGAUA--UAAUUAUA
..------...(((((.....((..(((((..((((....---...))))..)))))..))....)))))....((((((.--------..((((((......)))))).--)))))).. ( -19.20)
>DroSec_CAF1 1543 105 + 1
UUAC--AUAUAUGGAGAAAAAGUUUACAUGCCAAAGAAUU---UUUCUUUUCCGUGUCUACAAUGCUCCAAUAUUAAUUGA--------ACGUCUAAAUCAUCUUGGAUA--UAAUUAUA
....--.....(((((.....((..(((((..(((((...---..)))))..)))))..))....)))))....((((((.--------..((((((......)))))).--)))))).. ( -19.80)
>DroSim_CAF1 2538 105 + 1
UUAC--AUAUAUGGAGAAAAAGUUUACAUGCCAAAGUAUU---UUUCUUUUCCGUGUCUACAAUGCUCCAAUAUUAAUUGA--------ACGUCUAAAUCAUCUUGGAUA--UAAUUAUA
....--.....(((((.....((..(((((..((((....---...))))..)))))..))....)))))....((((((.--------..((((((......)))))).--)))))).. ( -18.30)
>DroEre_CAF1 1501 105 + 1
AUUC-----UGGGGAGACAAAGUUUACAUGCUAAAGAUUC---UUCCUUUCCCGUGUCUACAAAGCUCCGAUAUAAAUUGU-------AACGUUUAAAUCAUUUUAGAGAAUUCUUUUUG
.(((-----(((((((.....((..(((((..((((....---...))))..)))))..))....))))(((.(((((...-------...))))).)))...))))))........... ( -19.40)
>DroYak_CAF1 1483 106 + 1
UUCC-----UCGGGAGACAAAGUUUACAUGUUAAGGAUGU-GGCUUCUUUUUCGUGUCUACAAUGCUCCAACAUAAACUGU--------UCGUUUAAAUCUUCUUUUUCAAUUUAUUGUA
....-----...((((.((..((..(((((..(((((...-....)))))..)))))..))..))))))....(((((...--------..)))))........................ ( -19.50)
>DroAna_CAF1 1506 116 + 1
AUCCUCCCCAAGGGAGACAAAGUUUACAUGUUGAAGUCUUUAGAAUCUUCUCCGUGUCUACAACGCUCCAAGAUUAAAAAUAAGUACGAACGGC-ACAUCCU-UUGCAAU--GAAUUAUA
...(((((...))))).(((((..(...(((((..(((((...((((((....((((.....))))...))))))......))).))...))))-).)..))-)))....--........ ( -20.10)
>consensus
UUAC____AUAGGGAGAAAAAGUUUACAUGCUAAAGAAUU___UUUCUUUUCCGUGUCUACAAUGCUCCAAUAUUAAUUGA________ACGUCUAAAUCAUCUUGGAUA__UAAUUAUA
............((((.....((..(((((..((((..........))))..)))))..))....))))................................................... (-13.98 = -13.57 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:12 2006