| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,406,579 – 20,406,688 |
| Length | 109 |
| Max. P | 0.800665 |
| Location | 20,406,579 – 20,406,688 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.82 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -16.18 |
| Energy contribution | -15.82 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20406579 109 + 22407834 AAUAAUGC-----CUCGGGAGACAAAGUUUACAUGUUGAAGAUGAUGUGGCUUCUUUUUCGUGUCUACAAUGCUCCAAAAUAAAUUGUU-CGUUUAAA-----UCGUCUUAUUCGAUUUA ((((((..-----....((((.((..((..(((((..(((((.(......).)))))..)))))..))..)))))).......))))))-....((((-----(((.......))))))) ( -23.82) >DroSec_CAF1 1231 109 + 1 AGUAAGUC-----CUUGGGAGACAAAGUUUACACGUUAAAGAUGACGUGGCUUCUUUUUCGUGUCUACAAUGCUCCAAAAUAAACUGUU-CGUUUUAA-----UCUUCUUGUUCGAUUUA ..((((((-----....((((.((..((..(((((..(((((.(......).)))))..)))))..))..)))))).....((((....-.))))...-----...........)))))) ( -21.90) >DroSim_CAF1 2226 109 + 1 AGUAAGUC-----CUUGGGAGACAAAGUUUACAUGUUAAAGAUGAUGUUGCUUCUUUUUCGUGUCUACAAUGCUCCAAAAUAAACUGUU-CGUUUUAA-----UCGUCUUGUUCGAUUUA ..((((((-----....((((.((..((..(((((..(((((.(......).)))))..)))))..))..))))))......(((....-((......-----.))....))).)))))) ( -20.60) >DroYak_CAF1 1166 109 + 1 C-UAUAUCUCUAUUCUGGGAGACAAAGUUUACAUGCUAAAGAU-----UGUUUCUUUUCCGUGUCUACAAAGCUCCGAUAUAAAUUGUGACGUUUAAA-----UCAUCUUGGAGAAUCCU .-....((((((.....((((.....((..(((((..(((((.-----....)))))..)))))..))....))))(((.(((((......))))).)-----))....))))))..... ( -25.50) >DroAna_CAF1 1201 106 + 1 A---------CAU-UCUGGAGACAAAGUUUACAUGUUGAAGUCCA--UAGAAUCUUCCUCGUGUCUACAACGCUCCUAGAACAGCC-UC-CAACUCGAACGGCACAUCCUCUGUAAUGAA (---------(((-(((((((.....((..(((((..((((....--......))))..)))))..))....)))).))))..(((-..-..........)))........)))...... ( -21.30) >consensus A_UAAGUC_____CUUGGGAGACAAAGUUUACAUGUUAAAGAUGA_GUGGCUUCUUUUUCGUGUCUACAAUGCUCCAAAAUAAACUGUU_CGUUUAAA_____UCAUCUUGUUCGAUUUA .................((((.....((..(((((..(((((..........)))))..)))))..))....))))............................................ (-16.18 = -15.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:11 2006