Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,111,370 – 2,111,536 |
Length | 166 |
Max. P | 0.818316 |
Location | 2,111,370 – 2,111,477 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -22.26 |
Energy contribution | -23.06 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.87 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2111370 107 + 22407834 GGAAAAAUCAGUCGGGCUGAAACUGCAUUGCUCCUGCAGAUCCUUUGCUGCCUUCACCUGCGGCUAUCCUU--------UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUC .(((...((((.....))))..(((((.(((....((((........))))..........(((((.....--------........)))))....))).))))).)))...... ( -27.02) >DroSec_CAF1 119302 106 + 1 GGAAAAAUCAGUCGGGCAGAAACUGCAUUGCUCCUGCAGAUCCUUUGCUGCCUUCACCUGCGGCUAUCCU---------UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUC ..............(((((((.(((((.(((....((((........))))..........(((((....---------........)))))....))).))))).)))..)))) ( -25.70) >DroSim_CAF1 119112 107 + 1 GGAAAAAUCAGUCGGGCAGAAACUGCAAUGCUCCUGCAGAUCCUUUGCUGCCUUCACCUGCGGCUAUCCUC--------UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUC ..............(((((((.(((((((((....((((........))))..........(((((.....--------........)))))....))))))))).)))..)))) ( -28.82) >DroEre_CAF1 121985 114 + 1 GGAAAAAUCAGUCAGGCAAAAACUGCAUUGCUCCUGCAGAUCCUUU-CUGCCUUCACCUGCGGCUAUCCUUUUAUUUCUUUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUC ..............((((....(((((.(((....(((((.....)-))))..........(((((.....................)))))....))).)))))......)))) ( -24.40) >DroYak_CAF1 124264 106 + 1 GGAAAAAUCAGCCAGGCAAAAACUGCAUUGCUCCUGCAGAUCCUUCGCUGCCUCCACCUGCGGCUAUCCUU---------UUUUUCCCAGCCACCCGCAUUGCAGAUUCAAUGUC (((((((......(((......(((((.......))))).......(((((........)))))...))).---------))))))).........((((((......)))))). ( -22.40) >consensus GGAAAAAUCAGUCGGGCAGAAACUGCAUUGCUCCUGCAGAUCCUUUGCUGCCUUCACCUGCGGCUAUCCUU________UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUC ..............(((((((.(((((.(((....((((........))))..........(((((.....................)))))....))).))))).)))..)))) (-22.26 = -23.06 + 0.80)
Location | 2,111,370 – 2,111,477 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -31.21 |
Consensus MFE | -27.30 |
Energy contribution | -26.90 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.28 |
Structure conservation index | 0.87 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.672587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2111370 107 - 22407834 GACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA--------AAGGAUAGCCGCAGGUGAAGGCAGCAAAGGAUCUGCAGGAGCAAUGCAGUUUCAGCCCGACUGAUUUUUCC ....(((((.(((((.(((..(((((((........--------.....)))))))........((((........))))....))).))))).)))))................ ( -30.32) >DroSec_CAF1 119302 106 - 1 GACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA---------AGGAUAGCCGCAGGUGAAGGCAGCAAAGGAUCUGCAGGAGCAAUGCAGUUUCUGCCCGACUGAUUUUUCC (.(((((......))))))..(((((((........---------....))))))).((.((((.(((....((....((((((((......))))))))))..))).)))).)) ( -29.20) >DroSim_CAF1 119112 107 - 1 GACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA--------GAGGAUAGCCGCAGGUGAAGGCAGCAAAGGAUCUGCAGGAGCAUUGCAGUUUCUGCCCGACUGAUUUUUCC ......(((.(((((((((..(((((((........--------.....)))))))........((((........))))....))))))))).))).................. ( -32.22) >DroEre_CAF1 121985 114 - 1 GACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAAAGAAAUAAAAGGAUAGCCGCAGGUGAAGGCAG-AAAGGAUCUGCAGGAGCAAUGCAGUUUUUGCCUGACUGAUUUUUCC (.(((((......))))))(((((((((.....................))))))).(((..((((((-(((....(((((.......)))))))))))))).))).......)) ( -31.20) >DroYak_CAF1 124264 106 - 1 GACAUUGAAUCUGCAAUGCGGGUGGCUGGGAAAAA---------AAGGAUAGCCGCAGGUGGAGGCAGCGAAGGAUCUGCAGGAGCAAUGCAGUUUUUGCCUGGCUGAUUUUUCC ..........((((..(((..(((((((.......---------.....)))))))..)))...)))).((((((((.((.((.((((........)))))).)).)))))))). ( -33.10) >consensus GACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA________AAGGAUAGCCGCAGGUGAAGGCAGCAAAGGAUCUGCAGGAGCAAUGCAGUUUCUGCCCGACUGAUUUUUCC ......(((.(((((.(((..(((((((.....................)))))))........((((........))))....))).))))).))).................. (-27.30 = -26.90 + -0.40)
Location | 2,111,441 – 2,111,536 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 95.43 |
Mean single sequence MFE | -12.50 |
Consensus MFE | -10.82 |
Energy contribution | -11.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2111441 95 + 22407834 ---UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACAAAAAACGGAACAAAAACAC ---..(((((((.((.....)).((((........((((((....))))))...((.....)).))))..)))))))..................... ( -12.50) >DroSec_CAF1 119372 95 + 1 ---UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACAAAGAACGGAACAAAAACAC ---..(((((((.((.....)).((((........((((((....))))))...((.....)).))))..)))))))..................... ( -12.50) >DroSim_CAF1 119183 95 + 1 ---UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACAAAGAACGGAACAAAAACAC ---..(((((((.((.....)).((((........((((((....))))))...((.....)).))))..)))))))..................... ( -12.50) >DroEre_CAF1 122060 98 + 1 UCUUUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACACGGAACGGAACAAAAACAC (((..(((((((.((.....)).((((........((((((....))))))...((.....)).))))..)))))))...)))............... ( -13.40) >DroYak_CAF1 124335 94 + 1 ----UUUUUCCCAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACAAAGAACGGAACAAAACCAG ----...((((..((.....)).((((........((((((....))))))...((.....)).)))).................))))......... ( -11.60) >consensus ___UUUUUUUCUAGCCACCCGCAUUGCAGAUUCAAUGUCAAAAAUUUGACAAACUCAACAAGAAGCGAAAAGAAAAACAAAGAACGGAACAAAAACAC .....(((((((.((.....)).((((........((((((....))))))...((.....)).))))..)))))))..................... (-10.82 = -11.22 + 0.40)
Location | 2,111,441 – 2,111,536 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.43 |
Mean single sequence MFE | -19.60 |
Consensus MFE | -19.52 |
Energy contribution | -19.20 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.12 |
Structure conservation index | 1.00 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2111441 95 - 22407834 GUGUUUUUGUUCCGUUUUUUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA--- .....................(((((((..(((((((((((.((...((((((....)))))).....)).)))).).))))))..)))))))..--- ( -19.30) >DroSec_CAF1 119372 95 - 1 GUGUUUUUGUUCCGUUCUUUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA--- .....................(((((((..(((((((((((.((...((((((....)))))).....)).)))).).))))))..)))))))..--- ( -19.30) >DroSim_CAF1 119183 95 - 1 GUGUUUUUGUUCCGUUCUUUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA--- .....................(((((((..(((((((((((.((...((((((....)))))).....)).)))).).))))))..)))))))..--- ( -19.30) >DroEre_CAF1 122060 98 - 1 GUGUUUUUGUUCCGUUCCGUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAAAGA .................(...(((((((..(((((((((((.((...((((((....)))))).....)).)))).).))))))..)))))))...). ( -19.70) >DroYak_CAF1 124335 94 - 1 CUGGUUUUGUUCCGUUCUUUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUGGGAAAAA---- (..(((....(((((...((((..(((.....((((......)))).((((((....))))))..)))...)))).))))).)))..)......---- ( -20.40) >consensus GUGUUUUUGUUCCGUUCUUUGUUUUUCUUUUCGCUUCUUGUUGAGUUUGUCAAAUUUUUGACAUUGAAUCUGCAAUGCGGGUGGCUAGAAAAAAA___ .....................(((((((..(((((((((((.((...((((((....)))))).....)).)))).).))))))..)))))))..... (-19.52 = -19.20 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:06 2006