| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,406,246 – 20,406,342 |
| Length | 96 |
| Max. P | 0.975639 |
| Location | 20,406,246 – 20,406,342 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 66.71 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -12.31 |
| Energy contribution | -11.64 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20406246 96 + 22407834 AUUGCAAAUUUUAGGCUUUGGAGCCAAAGUGGCAUUCUUCAAAAACAAUAUU----UGAUCUGUGUCUCAAAAGCUCCAACAUUAACUAGAAAGACGAAC ........((((((...(((((((....(.(((((...(((((.......))----)))...))))).)....)))))))......))))))........ ( -21.70) >DroGri_CAF1 718 81 + 1 ------UC--------CAUGGAGUCAAAGUGGCAUAUUCUG----GAUUCCUCUUCCGAUUUGUGUCUCAAAUACUCCAAAAUCAAU-CUAAAUGCGAAC ------..--------..((((((....(.((((((...((----((.......))))...)))))).)....))))))........-............ ( -18.10) >DroSim_CAF1 1594 79 + 1 -----------------CUGGAGUCAAAGUGGCACAUUUUG----CGAUCUUCCUGUGACUUGUGUCUCAAAUACUCCAAUAUCAACUCAAAGGACGAAC -----------------.((((((....(.((((((..(..----((.......))..)..)))))).)....))))))..................... ( -18.70) >DroEre_CAF1 992 88 + 1 UUUGUAAUU--------CCGGAGUCAAAGUGGCAUAUCUUA----CGAUCUUCCUGUAACUUGUGUCUCAAAUGCUCCAAUAUCAAAUGUUAAGACGAAC (((((....--------..(((((....(.((((((..(((----((.......)))))..)))))).)....)))))(((((...)))))...))))). ( -17.60) >DroYak_CAF1 837 88 + 1 UUUGCAAUU--------CGGGAGUCAAAGUGGCACAUCUCG----CGAUCUUCCUGUAAGUUGUGUCUCAAAUGCUCCAAUAUCAAAUGUAUAGACGAAC .......((--------(((((((....(.((((((.((..----((.......))..)).)))))).)....))))).((((.....))))...)))). ( -20.20) >DroPer_CAF1 980 89 + 1 AUUGUAUU--------CCUGGAGCUAAAGUGGCAUAUUUCUGAACAAACCUU---CAGAUUUGUGUCUCAAAUACUCCAAUAAAAACUAGAUAGACGAAC .((((...--------..(((((.......((((((..((((((......))---))))..)))))).......))))).......((....)))))).. ( -20.84) >consensus _UUG_AAU_________CUGGAGUCAAAGUGGCAUAUUUCG____CAAUCUUCCUGUGAUUUGUGUCUCAAAUACUCCAAUAUCAACUAUAAAGACGAAC ...................(((((....(.((((((..(((...............)))..)))))).)....)))))...................... (-12.31 = -11.64 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:09 2006