Locus 7277

Sequence ID 2L_DroMel_CAF1
Location 20,394,806 – 20,394,896
Length 90
Max. P 0.896901
window11643

overview

Window 3

Location 20,394,806 – 20,394,896
Length 90
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 71.29
Mean single sequence MFE -25.00
Consensus MFE -7.59
Energy contribution -8.65
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -3.84
Structure conservation index 0.30
SVM decision value 0.99
SVM RNA-class probability 0.896901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20394806 90 - 22407834
GUUGCAAACAAUUUGCCAUAAAGCUGAAUGCAGAA-------ACCCAGCG-AAGGCAGA----GU-----GUCGAAAAAGGGAACAACGGUGGCCAAAACUCAAUCA
((..(..(((.((((((.....((((.........-------...)))).-..))))))----.)-----)).......(....)....)..))............. ( -17.90)
>DroPse_CAF1 57562 89 - 1
GUUGCAAACAAUUUGCAAUAAAAUUGAAUGCAGAACAGGACACACAGACAAAAGCCAUG----GC-----A---------GCCACAGCCAUGGCCAAAAGUCAAUCA
.(((((..((((((......))))))..))))).............(((....((((((----((-----.---------......)))))))).....)))..... ( -26.40)
>DroAna_CAF1 56314 107 - 1
GUUGCAAACAAUUUGCAAUAAAAUUGAAUGCACAACAGGGCAACCUGGCAAAAAGCAGGACCAGCAGUAGUACAAAAACUGCAACAACGUUGGCCAAAACUCAAUCA
(((((((.....)))))))...(((((.(((....((((....)))).......)))((.(((((.(((((......)))))......))))))).....))))).. ( -29.30)
>DroPer_CAF1 56999 89 - 1
GUUGCAAACAAUUUGCAAUAAAAUUGAAUGCAGAACAGGACACACAGACAAAAGCCAUG----GC-----A---------GCCACAGCCAUGGCCAAAAGUCAAUCA
.(((((..((((((......))))))..))))).............(((....((((((----((-----.---------......)))))))).....)))..... ( -26.40)
>consensus
GUUGCAAACAAUUUGCAAUAAAAUUGAAUGCAGAACAGGACAAACAGACAAAAGCCAGG____GC_____A_________GCAACAACCAUGGCCAAAACUCAAUCA
.(((((..((((((......))))))..)))))...............................................((((......))))............. ( -7.59 =  -8.65 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:06 2006