| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,379,677 – 20,379,778 |
| Length | 101 |
| Max. P | 0.642909 |
| Location | 20,379,677 – 20,379,778 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.85 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -14.07 |
| Energy contribution | -15.50 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20379677 101 - 22407834 AGCCCC-------------GAAAACAAAGGAGAGAGAUAUUAAAUCGCCUUGACCCCCGCA-GUAGACUCCCCCGGGGGGUCAAUUUCCCAAGUAGAUAAUAUAGUUUUCGCCAA .....(-------------((((((...((.(((((((.....)))...(((((((((...-.............)))))))))))))))..(((.....))).))))))).... ( -27.29) >DroSec_CAF1 36089 101 - 1 UGCUCC-------------AAAAACGAAGGGGAGAGAUAUUAAAUCGACUGGACCCCCCUA-GCAGACUCCCCGGGGGGGUCAAUUUCCCAAGUAGAUAAUAUAGUUUUCGCCAG ......-------------.........((.(((((.(((...(((.(((.((((((((..-(........)..)))))))).........))).)))...))).))))).)).. ( -30.20) >DroSim_CAF1 36075 100 - 1 UGCUCC-------------GAAAACAAAGGAGAGAGAUAUUAAAUCGACUUGACCU-CCUA-GCAGACUCCCCCGGGGGGUCAAUUUCCCAAGUAGAUAAUAUAGUUUUCGCCAG .....(-------------((((((...((.(((((((.....)))...(((((((-((..-(.........)..)))))))))))))))..(((.....))).))))))).... ( -25.50) >DroEre_CAF1 35548 102 - 1 ACCUCC-------------GAAAACAAAGGAGAAGCACAUUAUAUCGACUUGACCCCCCUAAGAAGACUUCCAAUGGGGGUCAAUUUCUGUAGUAGAUAAUAUAGUUUUCACCAG ......-------------((((((...(........)((((((..((.(((((((((....((.....))....))))))))).)).))))))..........))))))..... ( -23.30) >DroYak_CAF1 36321 87 - 1 AACUCC-------------GAAAACAAAGGAGAAGGACAUUAUAUCGACUUGAAUCCCUUAG------------AGGGGGUCAGUUUCUCAAGUAGAUAAUAUAGUUUUCAC--- ..((((-------------.........))))..(((.(((((((..((((((((((((...------------.)))))).......)))))).....))))))).)))..--- ( -21.71) >DroAna_CAF1 40752 107 - 1 UCCACCGGCAAAAUAAAAUAAAAACAAAGAAAGGAGCUA------AGACUUGACCC-CACA-GCAGACCCCCCAGCGAGGUCAAUUUCUUGAGUAGAUAAUAUAAUUCUUUCCAG ............................(((((((((((------(((.((((((.-....-((..........))..))))))..)))).)))...........)))))))... ( -14.60) >consensus AGCUCC_____________GAAAACAAAGGAGAGAGAUAUUAAAUCGACUUGACCCCCCUA_GCAGACUCCCCAGGGGGGUCAAUUUCCCAAGUAGAUAAUAUAGUUUUCGCCAG ............................((.(((((.(((...(((.(((((((((((.................))))))))........))).)))...))).))))).)).. (-14.07 = -15.50 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:05 2006