Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,364,815 – 20,364,914 |
Length | 99 |
Max. P | 0.940296 |
Location | 20,364,815 – 20,364,914 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.89 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -26.18 |
Energy contribution | -26.41 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.17 |
Mean z-score | -2.55 |
Structure conservation index | 0.84 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20364815 99 - 22407834 CUCAGCUAUGCCCACUUGUCUUGCUGAAUG--U-CAAAGUUUUGAGAGGAAGAAAACUUC----AGCAUUUAGCUGAAGAUGACUGCGCAUAGCCACGCCCCCAUC ....(((((((.((.(..((((((((((((--(-..(((((((.........))))))).----.)))))))))..))))..).)).)))))))............ ( -33.60) >DroVir_CAF1 36331 102 - 1 CUUAGCUAUGCCCACUUGUCUUGCUGAAGCAGCACCAGGCUG----CCGCCGGCAACUGUCUAACCCAUUUAGCUGAAGACGACUGCGCAUAGCCUGGGCCAGUGC ((..(((((((.((.((((((((((((((((((.....))))----)....(((....))).......))))))..))))))).)).)))))))..))........ ( -36.80) >DroSec_CAF1 21524 96 - 1 CUCAGCUAUGCCCACUUGUCUUGCUGAAUG--U-CAAAGUUUUGAGAGGAAGAAAACU-------GCAUUUAGCUGAAGAUGACUGCGCAUAGUCACGCCCCCAAC ....(((((((.((.(..((((((((((((--(-...((((((.........))))))-------)))))))))..))))..).)).)))))))............ ( -28.40) >DroSim_CAF1 21371 96 - 1 CUCAGCUAUGCCCACUUGUCUUGCUGAAUG--U-CAAAGUUUUGAGAGAAAGAAAACU-------GCAUUUAGCUGAAGAUGACUGCGCAUAGCCACGCCCCCAGC ....(((((((.((.(..((((((((((((--(-...((((((.........))))))-------)))))))))..))))..).)).)))))))............ ( -30.40) >DroEre_CAF1 21374 95 - 1 CUUAGCUAUGCCCACUUGUCUUGCUGAAUG--U-CAAAGUUUUGAGCGGAAGA-AACU-------ACAUUUGGCUGAAGAUGACUGCGCAUAGCCACGCCCUCAGC ....(((((((.((.(..((((((..((((--(-...((((((........))-))))-------)))))..))..))))..).)).)))))))............ ( -30.50) >DroYak_CAF1 21297 96 - 1 CUUAGCUAUGCCCACUUGUCUUGCUGAAUG--U-CAAAGUUUUGCAAGGAAGAAAACU-------ACAUUUAGCUUAAGAUGACUGCGCACAGCCACGCCCCCAUC ....(((.(((.((.(..((((((((((((--(-...((((((.(......)))))))-------)))))))))..))))..).)).))).)))............ ( -26.40) >consensus CUCAGCUAUGCCCACUUGUCUUGCUGAAUG__U_CAAAGUUUUGAGAGGAAGAAAACU_______GCAUUUAGCUGAAGAUGACUGCGCAUAGCCACGCCCCCAGC ....(((((((.((.(((((((((((((((.......((((((.........))))))........))))))))..))))))).)).)))))))............ (-26.18 = -26.41 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:04 2006