Locus 7274

Sequence ID 2L_DroMel_CAF1
Location 20,362,964 – 20,363,062
Length 98
Max. P 0.520819
window11640

overview

Window 0

Location 20,362,964 – 20,363,062
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 83.43
Mean single sequence MFE -38.00
Consensus MFE -26.49
Energy contribution -27.72
Covariance contribution 1.22
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.70
SVM decision value -0.03
SVM RNA-class probability 0.520819
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20362964 98 + 22407834
AUUUGAGCAGCCGCCGGUGGUU--GCGGUGGUGCAGCUCCAGCACCACAGGCCCAUUGAAAUGGGUGAAGGUGAAGGCAAGCGCUUGGACUUA-------UCGCGGA
......(((((((....)))))--)).(((((((.......)))))))..((((((....))))))((((((..((((....))))..)))).-------))..... ( -38.30)
>DroSec_CAF1 19629 98 + 1
AUUUGAACAGCCGCCGGUGGUU--GCGGUGGUGCAGCUCCAGCACCACCGUCCCAUUGAAAUGGGUGAAGGUGAAGGCAAGCGCUCGGACUUA-------UCGCGGA
..........((((((((((..--((((((((((.......)))))))))).))))))...((((((...((....))...))))))......-------..)))). ( -40.00)
>DroSim_CAF1 19499 98 + 1
AUUUGAGCAGCCGCCGGUGGUU--GCGGUGGUGCAGCUCCAGCACCACAGGCCCAUUGAAAUGGGUGAAGGUGAAGGCAAGCGCUCGGACUUA-------UCGCGGA
.(((((((.(((((((......--.)))))))...(((((..((((....((((((....))))))...))))..))..))))))))))....-------....... ( -38.40)
>DroEre_CAF1 19643 97 + 1
-UUUGAGCAGCCGCUGGUGGUU--GCGGUGGUGCAGCUCCGGCACCACAGGCCCAUUGAAAUGGGUGAAGGUGAAGGCAAACGCUGGGACUUA-------UCGCAGA
-.....(((((((....)))))--)).((((((.((..(((((..(((..((((((....))))))....)))..(.....))))))..))))-------))))... ( -38.10)
>DroYak_CAF1 19577 98 + 1
AUUUGAGCAGCCGCUGGUGGUU--GCGGUGGUGCAGCUCUACCACCACAGGCCCAUUGAAAUGGGUGAAGGUGAAGGCAAACGCUUGGACUUC-------GCGCAGA
..(((.(((((((....)))))--))(((((((......))))))).)))((((((....))))((((((....((((....))))...))))-------))))... ( -38.40)
>DroAna_CAF1 22881 95 + 1
AUCUGAGCUGCCCGCGGUGGUUUUUCCAUGGUGCAGU------------GGCCCAUUGAAAUGGGUGAAGGUGAAGGCGAAGGCUUGGACUUGGUCUUGGUCUUGAA
((((..(((((..((.((((.....)))).)))))))------------.((((((....))))))..)))).(((((.((((((.......)))))).)))))... ( -34.80)
>consensus
AUUUGAGCAGCCGCCGGUGGUU__GCGGUGGUGCAGCUCCAGCACCACAGGCCCAUUGAAAUGGGUGAAGGUGAAGGCAAACGCUUGGACUUA_______UCGCGGA
.(((((((.(((((((.........)))))))...(((....((((....((((((....))))))...))))..)))....))))))).................. (-26.49 = -27.72 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:03 2006