Locus 7273

Sequence ID 2L_DroMel_CAF1
Location 20,361,290 – 20,361,409
Length 119
Max. P 0.940519
window11639

overview

Window 9

Location 20,361,290 – 20,361,409
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -33.93
Consensus MFE -30.33
Energy contribution -30.45
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -2.12
Structure conservation index 0.89
SVM decision value 1.29
SVM RNA-class probability 0.940519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20361290 119 - 22407834
AACAAAAGAAUACAAGCUCCAAUCGGUUCAUUUCCAUUCUUAACAUGUCAGGUCAAAUGGACUCCAUGUUGAGGAAGAUGGCAGAUGUCCUGAAGGACCAAAGAGUAAAGGAGCUGUAU
.........(((((.(((((..((((..(((((((((((((((((((...((((.....)))).)))))))))...))))).)))))..))))...((......))...)))))))))) ( -38.60)
>DroSec_CAF1 17956 119 - 1
AACAGAAGAAUACAAGCUCCAAUCGGUUGCUCUCCAUUCUUAACAUGUCAGGUCAAAUGGACUCCAUGCUGAGGAAGAUGGCAGAUGUCCUGAAGGACCAACGAGUAAAGGAGCUCUAC
..............((((((..(((.(((((.((..((((((.((((...((((.....)))).)))).)))))).)).)))))..((((....))))...))).....)))))).... ( -33.70)
>DroSim_CAF1 17050 119 - 1
AACAAAAGAGUACAAGCUCCAAUCGGUUGCUCUCCAUUCUUAACAUGUCAGGUCAAAUGGACUCCAUGCUGAGGAAGAUGGCAGAUGUCCUGAAGGACCAACGAGUAAAGGAGCUCUAC
.........(((..((((((..(((.(((((.((..((((((.((((...((((.....)))).)))).)))))).)).)))))..((((....))))...))).....)))))).))) ( -33.80)
>DroYak_CAF1 17907 119 - 1
AACAAAAGAAUUCAAGCCCCAAUCGGUUGAUUUCCGUUCUUAAUAUGUCAGGUCAAAUGGACUCCAUGUUGAGGAAGAUGGCAGAUGUCCUGAAGGACCAACGAGUAAAGGAGCUGUAC
..............(((((...(((.(((((((((((((((((((((...((((.....)))).)))))))))...))))).))))((((....)))))))))).....)).))).... ( -29.60)
>consensus
AACAAAAGAAUACAAGCUCCAAUCGGUUGAUCUCCAUUCUUAACAUGUCAGGUCAAAUGGACUCCAUGCUGAGGAAGAUGGCAGAUGUCCUGAAGGACCAACGAGUAAAGGAGCUCUAC
..............((((((..........(((((((((((((((((...((((.....)))).)))))))))...))))).))).((((....))))...........)))))).... (-30.33 = -30.45 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:02 2006