Locus 727

Sequence ID 2L_DroMel_CAF1
Location 2,099,690 – 2,099,806
Length 116
Max. P 0.637236
window1193

overview

Window 3

Location 2,099,690 – 2,099,806
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.84
Mean single sequence MFE -13.94
Consensus MFE -9.55
Energy contribution -9.99
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.46
Structure conservation index 0.68
SVM decision value 0.21
SVM RNA-class probability 0.637236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2099690 116 + 22407834
UUCUUA----AAUUUCCAACAAUACAUUUUCUAUUUUACAUAACAAAUAUCCUCAAAUAUCUCAGCACAUUUUAGUCGAAUAGCUAAGGCUAUGCACCUUUUUUAUGUGCGCUAUUAUUU
......----............................................(((((.....((((((...((..(.(((((....))))).)..)).....)))))).....))))) ( -14.80)
>DroSec_CAF1 116772 115 + 1
UUCUUA----AAUUUCCAACAAUACAUUUUCUAUUUUACAUAACAAAUAUCCCACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU-UUUAUGUGCGCUAUUAUUU
......----......................................................((((((.........(((((....))))).......-...)))))).......... ( -13.61)
>DroSim_CAF1 116648 115 + 1
UUCUUA----AAUUUCCAACAAUUCAUUUUCUACUUUACAUAACAAAUAUCCUACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU-UUUAUGUGCGCUAUUAUUU
......----......................................................((((((.........(((((....))))).......-...)))))).......... ( -13.61)
>DroEre_CAF1 119405 96 + 1
UGUUGAAAUUCAUUUUUAAAA----------------------CUAAUUUCCUCCAAUAUCUCAGCACAUU-CCGUCGAAUGGCUAAAGCUAUGCACCUU-UUCAUAUACGCUAUUAUUU
..((((((.....))))))..----------------------....................(((.((((-(....))))))))..(((((((......-..))))...)))....... ( -10.00)
>DroYak_CAF1 121645 98 + 1
UGUUGA----CAUUUCCAACAACAC-----------------GCAAAUAACCGGCAAUAUCUCAGCACAUUUCUGUGGAAUAGCUUAAGCUAUGCACCUU-UUUAUAUGCGCUAUUAUUU
(((((.----......)))))...(-----------------(((.((((...((..........((((....))))..(((((....))))))).....-.)))).))))......... ( -17.70)
>consensus
UUCUUA____AAUUUCCAACAAUACAUUUUCUA_UUUACAUAACAAAUAUCCUACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU_UUUAUGUGCGCUAUUAUUU
................................................................((((((.........(((((....)))))...........)))))).......... ( -9.55 =  -9.99 +   0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006