Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,099,690 – 2,099,806 |
Length | 116 |
Max. P | 0.637236 |
Location | 2,099,690 – 2,099,806 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -13.94 |
Consensus MFE | -9.55 |
Energy contribution | -9.99 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.46 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2099690 116 + 22407834 UUCUUA----AAUUUCCAACAAUACAUUUUCUAUUUUACAUAACAAAUAUCCUCAAAUAUCUCAGCACAUUUUAGUCGAAUAGCUAAGGCUAUGCACCUUUUUUAUGUGCGCUAUUAUUU ......----............................................(((((.....((((((...((..(.(((((....))))).)..)).....)))))).....))))) ( -14.80) >DroSec_CAF1 116772 115 + 1 UUCUUA----AAUUUCCAACAAUACAUUUUCUAUUUUACAUAACAAAUAUCCCACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU-UUUAUGUGCGCUAUUAUUU ......----......................................................((((((.........(((((....))))).......-...)))))).......... ( -13.61) >DroSim_CAF1 116648 115 + 1 UUCUUA----AAUUUCCAACAAUUCAUUUUCUACUUUACAUAACAAAUAUCCUACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU-UUUAUGUGCGCUAUUAUUU ......----......................................................((((((.........(((((....))))).......-...)))))).......... ( -13.61) >DroEre_CAF1 119405 96 + 1 UGUUGAAAUUCAUUUUUAAAA----------------------CUAAUUUCCUCCAAUAUCUCAGCACAUU-CCGUCGAAUGGCUAAAGCUAUGCACCUU-UUCAUAUACGCUAUUAUUU ..((((((.....))))))..----------------------....................(((.((((-(....))))))))..(((((((......-..))))...)))....... ( -10.00) >DroYak_CAF1 121645 98 + 1 UGUUGA----CAUUUCCAACAACAC-----------------GCAAAUAACCGGCAAUAUCUCAGCACAUUUCUGUGGAAUAGCUUAAGCUAUGCACCUU-UUUAUAUGCGCUAUUAUUU (((((.----......)))))...(-----------------(((.((((...((..........((((....))))..(((((....))))))).....-.)))).))))......... ( -17.70) >consensus UUCUUA____AAUUUCCAACAAUACAUUUUCUA_UUUACAUAACAAAUAUCCUACAAUAUCUCAGCACAUUUCUGUCGAAUAGCUAAGGCUAUGCACCUU_UUUAUGUGCGCUAUUAUUU ................................................................((((((.........(((((....)))))...........)))))).......... ( -9.55 = -9.99 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006