| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,352,593 – 20,352,685 |
| Length | 92 |
| Max. P | 0.545538 |
| Location | 20,352,593 – 20,352,685 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.66 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -11.37 |
| Energy contribution | -12.15 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20352593 92 - 22407834 CAAAACUGGGUCUAUCUAUUCGUAUAACUUACACA-AGCAGCUCUCAAAAGUUGCA-------UGGUGGCAACGUCGUAAAAUAGGUAAAAUACAAUAAG ............((((((((.(((.....)))...-.((((((......))))))(-------((..(....)..)))..))))))))............ ( -18.30) >DroSec_CAF1 9592 92 - 1 CGAAACUGGGUCUAUCUGUUCGUAUAACUUACACA-AGCAGCUCUUAAAAGUUGCA-------UGGCGGCAACGUCGUAAAAUAAGUAAAAUACAAUAAG .(((...((.....))..)))((((.(((((....-.((((((......))))))(-------(((((....))))))....)))))...))))...... ( -22.00) >DroSim_CAF1 8609 92 - 1 CGAAACUGGGUCUAUCUGUUCGUAUAACUUACACA-AGCAGCUCUUAAAAGUUGCA-------UGGCGGCAACGUCGUAAAAUAAGUAAAAUACAAUAAG .(((...((.....))..)))((((.(((((....-.((((((......))))))(-------(((((....))))))....)))))...))))...... ( -22.00) >DroEre_CAF1 10094 74 - 1 CAAAACUGGGUCUAUA----------ACUUACACA-AGCAGCUCUGAAAAGUUGCA-------CGGCGGCAACCUCGUUAAAUAAGUUU--------UAA .((((((.........----------.........-.((((((......))))))(-------(((.(....).))))......)))))--------).. ( -15.00) >DroYak_CAF1 9498 79 - 1 CAAAACUGGGUCUAUCUAUUC-----GUUUACACA-AGCAGCUCUAAAAAACUGCA-------UGGCGGAAAAGUCGUAAGAUAAGUGU--------UAA ....(((..((((........-----.........-.((((..........))))(-------((((......))))).)))).)))..--------... ( -12.90) >DroAna_CAF1 9449 97 - 1 CAAAACUGGGACUAACUAUACUCAUAACUUACACAAAGCAGCAUUUGAGAGUUGCAGCAGGGUUGGCGGCAACAUCGUAAACUAAUUUAAA---ACUAAG ......((((..........))))....((((.((((......)))).(((((((.((.......)).))))).))))))...........---...... ( -13.60) >consensus CAAAACUGGGUCUAUCUAUUCGUAUAACUUACACA_AGCAGCUCUUAAAAGUUGCA_______UGGCGGCAACGUCGUAAAAUAAGUAAAA___AAUAAG ............................((((.....((((((......)))))).........((((....)))))))).................... (-11.37 = -12.15 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:55 2006