| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,348,132 – 20,348,241 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 20,348,132 – 20,348,241 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.49 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -28.50 |
| Energy contribution | -27.87 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20348132 109 - 22407834 CUGCCACUUCCCGAUCCGCUGGUGGCAUUCAAUAAACUGGGUCGCAACGGCGGCGUGGGUCGCAGGCAGCUGAUGGUCCAGUUAGCUGCAGAUGCA------AAACACAUUUG---AU-- ((((.....((((..((((((...(((((((......))))).))..))))))..))))..))))(((((((((......)))))))))(((((..------.....))))).---..-- ( -41.70) >DroSec_CAF1 5162 109 - 1 CUGCCACUUCCCGAUCCGCUGGUGGCAUUCAAUAAACUGGGUCGCAACGGCGGCGUGGGUCGCAGGCAGCUGAUGGUCCAGUUAGCUGAGGAUGCA------AAACACAUUUG---AU-- ((((.....((((..((((((...(((((((......))))).))..))))))..))))..)))).((((((((......)))))))).(((((..------.....))))).---..-- ( -37.80) >DroEre_CAF1 5652 106 - 1 CUGCCACUUCCCGAUCCGCUGGUGGCAUUCAACAAACUGGGGCGCAACGGCGGCGUGGGUCGCAGGCAGCUGAUGGUCCAGUUAGCUGGGGAUGCA------AAAG---AUUG---AU-- ((((.....((((..((((((.((((.((((......)))))).)).))))))..))))..)))).((((((((......))))))))........------....---....---..-- ( -36.50) >DroYak_CAF1 5092 109 - 1 CUGCCACUUCCCGAUCCGCUGGUGGCAUUCAACAAACUGGGGCGCAACGGCGGCGUGGGUCGCAGGCAGCUGAUGGUCCAGUUAGCUGGGGAUGCA------AAAG---UUUGAAUAU-- .(((((((..(......)..))))))).....((((((...((((..(((((((.(((..(((((....))).))..)))))).))))..).))).------..))---)))).....-- ( -39.70) >DroAna_CAF1 5138 94 - 1 CCGCCACUCCCCGAGCCGCUGGUGGCCUUCAACAAACUGGGCCGCAACGGCGGCGUGGGACGCAGGCAACUGAUGGUCCAGUUAGCUGAGGAUU-------------------------- ((((((...((((.((((((((((((((..........)))))))..))))))).))))...(((....))).)))).(((....))).))...-------------------------- ( -44.00) >DroPer_CAF1 5120 114 - 1 CCACCGCCUC---CGCCGCUGGAGGUGUUUAACAAACUGGGGCGCAGCGGCGGCGUAGGACGCAAACAGCUGAUGGUCCAGUUAGCUGAGGAUUCGGAGACGACACACAUUAG---UGGA (((((((((.---((((((((...((((((.........))))))..)))))))).))).))....((((((((......)))))))).....(((....))).........)---))). ( -45.70) >consensus CUGCCACUUCCCGAUCCGCUGGUGGCAUUCAACAAACUGGGGCGCAACGGCGGCGUGGGUCGCAGGCAGCUGAUGGUCCAGUUAGCUGAGGAUGCA______AAAC___UUUG___AU__ .(((((((............)))))))((((.(.(((((((.(.((.((((.(((.....))).....)))).)))))))))).).)))).............................. (-28.50 = -27.87 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:53 2006