Locus 7266

Sequence ID 2L_DroMel_CAF1
Location 20,344,907 – 20,345,005
Length 98
Max. P 0.579220
window11627

overview

Window 7

Location 20,344,907 – 20,345,005
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 86.20
Mean single sequence MFE -30.87
Consensus MFE -24.43
Energy contribution -24.97
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -1.95
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.579220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20344907 98 + 22407834
AGUUUUACCAAAACAAGCGGAACGAU------UCCAUGUGCAACUCCACAGGCACAUUCGUGGACCAUGGCACGGGUGCCAGGAGGCACUGUUCCUCUAUCAAC
.((((.....)))).((.(((((...------....(((((...(((((..........))))).....)))))((((((....))))))))))).))...... ( -30.50)
>DroSec_CAF1 1925 98 + 1
AGUUUUACCAAAACAAGCGGAAUGAU------UCCAUGUGCAACUCCACAGGCACAUUUGUGGACCAUGGCACGGGUGCCAGGAGGCACUGUUCCUCUAUUAAC
.((((.....)))).((.(((((...------....(((((...((((((((....)))))))).....)))))((((((....))))))))))).))...... ( -31.10)
>DroSim_CAF1 1927 98 + 1
AGUUUUACCAAAACAAGCGGAACGAU------UCCAUGUGCAACUCCACAGGCACAUUUGUGGACCAUGGCACGGGUGCCAGGAGGCACUGUUCCUCUAUUAAC
.((((.....)))).((.(((((...------....(((((...((((((((....)))))))).....)))))((((((....))))))))))).))...... ( -33.20)
>DroEre_CAF1 2407 98 + 1
AGUUUUACCAAAACAAGCGCAAUGAU------UCCCUGUGCAAUUCCACAGGCACUUUUGUAGACCACGGCACGGGUGCCAGGAGGCACUGUUCCUCUAUUAAC
.((((.....))))..(((((.....------....))))).........((((((..(((........)))..)))))).(((((.......)))))...... ( -24.90)
>DroAna_CAF1 2119 98 + 1
AGUUCUACCAGAACAAGCGGAACGAU------UCCAUGUGCAACUCCACGGGAACCUUUGUGGACCACGGCACAGGUGCCAGGCGGCACUGCUCCUCCAUUAAU
.((((.....)))).((((((.....------))).(((((...((((((((....)))))))).....)))))((((((....)))))))))........... ( -32.30)
>DroPer_CAF1 1988 104 + 1
AGUUUUACCAGAACAAGAGGAACGAUUCAGAUUCCCUUUGGAACUCCACUGGCACUUUCGUGGACCAUGGAGGAGUGUCCAGGAGACACUGUUCCUCCAUCAAU
.((((.....))))..(((((((..((((((.....)))))).(((((.(((..(......)..)))))))).((((((.....)))))))))))))....... ( -33.20)
>consensus
AGUUUUACCAAAACAAGCGGAACGAU______UCCAUGUGCAACUCCACAGGCACAUUUGUGGACCAUGGCACGGGUGCCAGGAGGCACUGUUCCUCUAUUAAC
.((((.....))))....(((((.............(((((...((((((((....)))))))).....)))))((((((....)))))))))))......... (-24.43 = -24.97 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:52 2006