Locus 7264

Sequence ID 2L_DroMel_CAF1
Location 20,339,245 – 20,339,344
Length 99
Max. P 0.880179
window11623

overview

Window 3

Location 20,339,245 – 20,339,344
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -36.05
Consensus MFE -28.24
Energy contribution -30.30
Covariance contribution 2.06
Combinations/Pair 1.13
Mean z-score -1.93
Structure conservation index 0.78
SVM decision value 0.91
SVM RNA-class probability 0.880179
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20339245 99 - 22407834
UAAUGAUGCUUGUUGGUUCUGGGAAUCCAAUGGGGGAGUUUGGGGCCGGGAGGCAGGUGGCAUGCGGCAGGCAGCGGCAGGCAGAACGUGCCUCCGUCG
....(((......((((((..((..(((.....)))..))..))))))(((((((.((.((.(((.((.....)).))).))...)).)))))))))). ( -43.00)
>DroSec_CAF1 86227 89 - 1
UAAUGAUGCUUGUUGGUUCUGGGGAUCCAAUGGGGAAGUUUGAGGCCGGGAGGCAGGUGGCAUGCGGCA----------GGCAGAACGUGCCUCCUUCG
........((..((((.((....)).))))..))((((...(((((((....((..((.(....).)).----------.))....)).))))))))). ( -31.30)
>DroSim_CAF1 82192 99 - 1
UAAUGAUGCUUGUUGGUUCUGGGGAUCCAAUGGGGGAGUUUGGGGCCGGGAGGCAGGUGGCAUGCGGCAGGCAGCGGCAGGCAGAACGAGCCUCCGUCG
....(((......((((((..((..(((......))).))..))))))((((((..((.((.(((.((.....)).))).))...))..))))))))). ( -39.20)
>DroYak_CAF1 62433 85 - 1
UAAUGAUGCUUGUUGGUUCUGGGGAUCCAAUAGGGAAGUUUGGGACCAGGAGGAAAGUG-------GCAGGUACCG-------AAACGUGCCUCCAUCG
........(((.(((((((..((..(((.....)))..))..))))))).)))...(((-------(.((((((..-------....)))))))))).. ( -30.70)
>consensus
UAAUGAUGCUUGUUGGUUCUGGGGAUCCAAUGGGGAAGUUUGGGGCCGGGAGGCAGGUGGCAUGCGGCAGGCAGCG___GGCAGAACGUGCCUCCGUCG
....(((......(((((((..(..(((.....)))..)..)))))))(((((((.((.((.(((.((.....)).))).))...)).)))))))))). (-28.24 = -30.30 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:48 2006