Locus 7263

Sequence ID 2L_DroMel_CAF1
Location 20,338,916 – 20,339,021
Length 105
Max. P 0.649957
window11622

overview

Window 2

Location 20,338,916 – 20,339,021
Length 105
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 87.77
Mean single sequence MFE -19.20
Consensus MFE -19.67
Energy contribution -18.23
Covariance contribution -1.43
Combinations/Pair 1.19
Mean z-score -0.41
Structure conservation index 1.02
SVM decision value 0.24
SVM RNA-class probability 0.649957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20338916 105 - 22407834
CUUGAGCUUUAAGCUUUAA--AUGUCCUUUGUUGGGACUAAACGAUUGAAACUGUUUUUAACGUAAAUAGGAUUUUGUCAUGUGUCUAAAAAUGUAUUAGAUUUUCU
...((((.....))))...--..(((((.....))))).....(((.(((.((((((.......))))))..))).)))....((((((.......))))))..... ( -17.10)
>DroSec_CAF1 85899 105 - 1
CUUCAGCUUUAAGCUGUAAAUAUGUCCCUUGGUGGGACUAAACGAUUAAAA--GUUUUUAACGUAAAUAGGAUGUUGUCAUGAUUUUAAAAGUGUAUAAUAUUUUUU
...((((.....)))).......(((((.....)))))...(((.(((((.--...))))))))....(((((((((((((..........))).)))))))))).. ( -20.80)
>DroSim_CAF1 81864 105 - 1
CCUCAGCUUUAAGCUGUAAGUAUGUCCCUUGGUGGGACUAAACGAUUAAAA--GUUUUUAACGUAAAUAGGAUGUUGUCAUGAUUUUAAAAGUGUGUAAUAUUUUUU
...((((.....)))).(((((((((((.....)))))...((..((((((--.....((((((.......))))))......))))))..)).....))))))... ( -19.70)
>consensus
CUUCAGCUUUAAGCUGUAA_UAUGUCCCUUGGUGGGACUAAACGAUUAAAA__GUUUUUAACGUAAAUAGGAUGUUGUCAUGAUUUUAAAAGUGUAUAAUAUUUUUU
...((((.....)))).......(((((.....)))))...(((.((((((....)))))))))....(((((((((((((..........))).)))))))))).. (-19.67 = -18.23 +  -1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:47 2006