Locus 7262

Sequence ID 2L_DroMel_CAF1
Location 20,338,007 – 20,338,116
Length 109
Max. P 0.596668
window11621

overview

Window 1

Location 20,338,007 – 20,338,116
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -26.73
Consensus MFE -21.74
Energy contribution -21.62
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.596668
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20338007 109 - 22407834
UGGCAAACAUAAAUAAAACACAGCGCUCGACCAAAAUAGAAACCUAGAAAACCAGGGCUGCAAUCGGCCGCAGCCAAACUAAAGAUGUGUACGUGCCAACAGGUCCUCG
(((((.(((((...........((((((........(((....)))........)))).))....(((....)))..........)))))...)))))........... ( -23.69)
>DroSec_CAF1 84997 109 - 1
UGGCAAACAUAAAUAAAACACAGCGCUCGACCAAAAUAGAAACCUAGAAAACCAGGGCUGCAAUCGGCCGUAGCCAAACUAGAGAUGUGUGCGUGCCAACAGGUCCUCG
(((((............(((((...(((........(((....))).........((((((........))))))......))).)))))...)))))........... ( -25.06)
>DroSim_CAF1 81066 109 - 1
UGGCAAACAUAAAUAAAACACAGCGCUCGACCAAAAUAGAAACCUAGAUAACCAGGGCUGCAAUCGGCCGCAGCCAAACUAGAGAUGUGUGCGUGCCAACAGGUCCUCG
(((((............(((((...(((........(((....))).........((((((........))))))......))).)))))...)))))........... ( -27.06)
>DroEre_CAF1 67719 109 - 1
UGGCAAACAUAAAUAAAACACAGCGCACGACCAAAAUAGAAACCUAGAAAACCAGGGCUGCAAUCGCCCGCAGCUAAAUUAGGGAUGUGUGCGUGCCAACAGGUCCUCG
(((((.................(((((((.((..........(((........)))(((((........)))))........)).))))))).)))))........... ( -28.87)
>DroYak_CAF1 61252 109 - 1
UGGCAAACAUAAAUAAAACACAGCGCACGACCAAAAUAGAAACCUAGAAAACCAGGGCUGCAAUAGCCCGCAUCCAAAUUGGGGAUGUGUGCGUGCCAACAGGUCCUCG
((((..................((((((..........................((((((...))))))((((((.......))))))))))))))))........... ( -28.96)
>consensus
UGGCAAACAUAAAUAAAACACAGCGCUCGACCAAAAUAGAAACCUAGAAAACCAGGGCUGCAAUCGGCCGCAGCCAAACUAGAGAUGUGUGCGUGCCAACAGGUCCUCG
(((((.(((((.........................(((....))).........((((((........))))))..........)))))...)))))........... (-21.74 = -21.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:46 2006