Locus 7261

Sequence ID 2L_DroMel_CAF1
Location 20,333,788 – 20,333,888
Length 100
Max. P 0.530611
window11620

overview

Window 0

Location 20,333,788 – 20,333,888
Length 100
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.65
Mean single sequence MFE -31.65
Consensus MFE -21.05
Energy contribution -20.67
Covariance contribution -0.38
Combinations/Pair 1.33
Mean z-score -1.32
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.530611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20333788 100 + 22407834
UCAGUGCAAGUUGUGCCAGCGCACGGUCUGCGCCAAGUGCUAUACCAAGGUAGGUAC----CGGGUUAAUGGUUAAC-CAUAGGGCUGCAUAUUUACUAUUUUC----G
...(((((..((((((....))))))..)))))...((((..((((......))))(----(.(((((.....))))-)...))...)))).............----. ( -29.30)
>DroPse_CAF1 48376 107 + 1
UCAGUGCAAGCUCUGCCAGCGCACUGUCUGCGCCAAGUGCUAUACCAAGGUGGGUGGAAUCUGGAACACUAACUGACUCAUUUCAUUGUCUAAUCAC--UUUCUUAUUG
.((((((..(((.....)))))))))...((((...))))......((((((..((((...(((((..............)))))...))))..)))--)))....... ( -22.74)
>DroSec_CAF1 80774 100 + 1
CCAGUGCAAGCUGUGCCAGCGCACAGUCUGCGCCAAGUGCUAUACCAAGGUGGGUAC----CGGGUUAUUGGUUAAC-CAUAUGGCUGCAUAUUUACACAUUCC----G
...(((((..((((((....))))))..)))))...((((....(((..((((..((----(((....)))))...)-))).)))..)))).............----. ( -34.50)
>DroSim_CAF1 76818 100 + 1
CCAGUGCAAGCUGUGCCAGCGCACGGUCUGCGCCAAGUGCUAUACCAAGGUGGGUAC----CGGGUUAUUGGUUAAC-CAUAUGGCUGCAUAUUUACUGUUUCC----G
.(((((((..((((((....))))))..)))((((.(((((.(((....))))))))----..(((((.....))))-)...)))).........)))).....----. ( -35.20)
>DroEre_CAF1 63429 98 + 1
CCAGUGCAAGCUGUGCCAGCGCACGGUCUGCGCCAAGUGCUAUACCAAGGUGGGUUU----UUGGGUAAUGGUUAAC-CCUAGGCCUGCAUAUUUACAAUUU------G
...(((((..((((((....))))))..)))))(((((...........(..(((((----..((((........))-)).)))))..).........))))------) ( -33.65)
>DroYak_CAF1 57089 100 + 1
UCAGUGCAAGCUGUGCCAGCGCACGGUCUGCGCCAAGUGCUAUACCAAGGUGGGUAU----UUGGCUAAUGGUUAUC-CCUAGGCCAACAUAUUUAUAAUUUCU----G
.....(((..((((((....))))))..)))((((((((((.(((....))))))))----)))))...(((((...-....))))).................----. ( -34.50)
>consensus
CCAGUGCAAGCUGUGCCAGCGCACGGUCUGCGCCAAGUGCUAUACCAAGGUGGGUAC____CGGGUUAAUGGUUAAC_CAUAGGGCUGCAUAUUUACAAUUUCC____G
((.(((((..((((((....))))))..)))))...(((((.(((....))))))))......))............................................ (-21.05 = -20.67 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:45 2006